Strain Fitness in Sinorhizobium meliloti 1021 around SMa1878

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1875 and SMa1878 are separated by 664 nucleotidesSMa1878 and SMa1881 are separated by 526 nucleotides SMa1875: SMa1875 - reverse transcriptase, at 1,065,694 to 1,067,211 SMa1875 SMa1878: SMa1878 - transposase, at 1,067,876 to 1,068,031 SMa1878 SMa1881: SMa1881 - hypothetical protein, at 1,068,558 to 1,069,151 SMa1881 Position (kb) 1067 1068 1069Strain fitness (log2 ratio) -1 0 1 2at 1066.940 kb on + strand, within SMa1875at 1066.941 kb on - strand, within SMa1875at 1067.143 kb on - strandat 1067.177 kb on - strandat 1067.230 kb on + strandat 1067.230 kb on + strandat 1067.230 kb on + strandat 1067.238 kb on + strandat 1067.293 kb on + strandat 1067.322 kb on + strandat 1067.405 kb on - strandat 1067.447 kb on - strandat 1067.558 kb on + strandat 1067.559 kb on - strandat 1067.559 kb on - strandat 1067.560 kb on + strandat 1067.560 kb on + strandat 1067.654 kb on + strandat 1067.655 kb on - strandat 1067.833 kb on + strandat 1067.833 kb on + strandat 1067.833 kb on + strandat 1067.833 kb on + strandat 1067.833 kb on + strandat 1067.834 kb on - strandat 1067.834 kb on - strandat 1067.834 kb on - strandat 1067.834 kb on - strandat 1067.838 kb on - strandat 1067.991 kb on + strand, within SMa1878at 1067.991 kb on + strand, within SMa1878at 1067.992 kb on - strand, within SMa1878at 1068.482 kb on + strandat 1068.483 kb on - strandat 1068.672 kb on - strand, within SMa1881at 1068.672 kb on - strand, within SMa1881at 1068.672 kb on - strand, within SMa1881at 1068.741 kb on - strand, within SMa1881at 1068.755 kb on + strand, within SMa1881at 1068.789 kb on - strand, within SMa1881at 1068.868 kb on + strand, within SMa1881at 1068.879 kb on + strand, within SMa1881at 1068.879 kb on + strand, within SMa1881at 1068.879 kb on + strand, within SMa1881at 1068.880 kb on - strand, within SMa1881at 1068.880 kb on - strand, within SMa1881at 1068.936 kb on + strand, within SMa1881at 1068.936 kb on + strand, within SMa1881

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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1,066,940 + SMa1875 0.82 +0.4
1,066,941 - SMa1875 0.82 +0.4
1,067,143 - -0.3
1,067,177 - -0.0
1,067,230 + -0.2
1,067,230 + -0.2
1,067,230 + +0.8
1,067,238 + +0.3
1,067,293 + +0.0
1,067,322 + +2.3
1,067,405 - +0.2
1,067,447 - -0.4
1,067,558 + +0.5
1,067,559 - -0.2
1,067,559 - +0.1
1,067,560 + +0.6
1,067,560 + -0.7
1,067,654 + +0.3
1,067,655 - +1.4
1,067,833 + -0.3
1,067,833 + -0.4
1,067,833 + +0.2
1,067,833 + -0.3
1,067,833 + +0.4
1,067,834 - +0.3
1,067,834 - -0.3
1,067,834 - +0.3
1,067,834 - +0.1
1,067,838 - +0.5
1,067,991 + SMa1878 0.74 +0.5
1,067,991 + SMa1878 0.74 +0.4
1,067,992 - SMa1878 0.74 +0.4
1,068,482 + -0.1
1,068,483 - -0.3
1,068,672 - SMa1881 0.19 -0.3
1,068,672 - SMa1881 0.19 -0.6
1,068,672 - SMa1881 0.19 -0.9
1,068,741 - SMa1881 0.31 -0.7
1,068,755 + SMa1881 0.33 +0.2
1,068,789 - SMa1881 0.39 +0.0
1,068,868 + SMa1881 0.52 +0.9
1,068,879 + SMa1881 0.54 +0.2
1,068,879 + SMa1881 0.54 -0.3
1,068,879 + SMa1881 0.54 -0.5
1,068,880 - SMa1881 0.54 +0.3
1,068,880 - SMa1881 0.54 -0.1
1,068,936 + SMa1881 0.64 +0.0
1,068,936 + SMa1881 0.64 -1.0

Or see this region's nucleotide sequence