Strain Fitness in Sinorhizobium meliloti 1021 around SMa1697

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1696 and SMa1697 are separated by 281 nucleotidesSMa1697 and SMa1698 are separated by 260 nucleotides SMa1696: SMa1696 - Sensor histidine kinase, at 955,590 to 956,786 SMa1696 SMa1697: SMa1697 - hypothetical protein, at 957,068 to 957,667 SMa1697 SMa1698: SMa1698 - syrB1 regulator, at 957,928 to 958,383 SMa1698 Position (kb) 957 958Strain fitness (log2 ratio) -1 0 1at 956.189 kb on + strand, within SMa1696at 956.293 kb on + strand, within SMa1696at 956.293 kb on + strand, within SMa1696at 956.471 kb on - strand, within SMa1696at 956.526 kb on - strand, within SMa1696at 956.539 kb on - strand, within SMa1696at 956.638 kb on + strand, within SMa1696at 956.639 kb on - strand, within SMa1696at 956.716 kb on + strandat 956.717 kb on - strandat 956.717 kb on - strandat 956.721 kb on + strandat 956.772 kb on - strandat 956.772 kb on - strandat 956.784 kb on + strandat 956.834 kb on + strandat 956.834 kb on + strandat 956.994 kb on - strandat 957.048 kb on - strandat 957.048 kb on - strandat 957.419 kb on + strand, within SMa1697at 957.500 kb on + strand, within SMa1697at 957.688 kb on - strandat 957.741 kb on - strandat 957.741 kb on - strandat 957.878 kb on - strandat 958.118 kb on + strand, within SMa1698at 958.132 kb on + strand, within SMa1698at 958.133 kb on - strand, within SMa1698at 958.149 kb on + strand, within SMa1698at 958.365 kb on + strandat 958.368 kb on + strandat 958.400 kb on + strandat 958.401 kb on - strandat 958.556 kb on - strandat 958.583 kb on + strandat 958.583 kb on + strandat 958.583 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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956,189 + SMa1696 0.50 +1.1
956,293 + SMa1696 0.59 +0.5
956,293 + SMa1696 0.59 +0.2
956,471 - SMa1696 0.74 +0.1
956,526 - SMa1696 0.78 +0.2
956,539 - SMa1696 0.79 -0.1
956,638 + SMa1696 0.88 -0.2
956,639 - SMa1696 0.88 -0.8
956,716 + -1.0
956,717 - -0.5
956,717 - -0.1
956,721 + -0.7
956,772 - -0.0
956,772 - -0.8
956,784 + -0.5
956,834 + +1.2
956,834 + -0.4
956,994 - -1.2
957,048 - +0.1
957,048 - -0.0
957,419 + SMa1697 0.58 +1.2
957,500 + SMa1697 0.72 +0.7
957,688 - +0.7
957,741 - +0.2
957,741 - +0.7
957,878 - +0.0
958,118 + SMa1698 0.42 -1.0
958,132 + SMa1698 0.45 +0.5
958,133 - SMa1698 0.45 -0.1
958,149 + SMa1698 0.48 +0.7
958,365 + +0.3
958,368 + -0.5
958,400 + -0.0
958,401 - +0.8
958,556 - -1.5
958,583 + +0.5
958,583 + -0.3
958,583 + +1.5

Or see this region's nucleotide sequence