Strain Fitness in Sinorhizobium meliloti 1021 around SMa1362

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1358 and SMa1361 are separated by 320 nucleotidesSMa1361 and SMa1362 are separated by 408 nucleotidesSMa1362 and SMa1363 overlap by 4 nucleotides SMa1358: SMa1358 - Lyase, at 744,913 to 745,287 SMa1358 SMa1361: SMa1361 - hypothetical protein, at 745,608 to 745,790 SMa1361 SMa1362: SMa1362 - inner-membrane permease, at 746,199 to 747,599 SMa1362 SMa1363: SMa1363 - ABC transporter permease, at 747,596 to 748,684 SMa1363 Position (kb) 746 747 748Strain fitness (log2 ratio) -1 0 1 2at 745.205 kb on - strand, within SMa1358at 745.217 kb on - strand, within SMa1358at 745.217 kb on - strand, within SMa1358at 745.217 kb on - strand, within SMa1358at 745.219 kb on + strand, within SMa1358at 745.220 kb on - strand, within SMa1358at 745.220 kb on - strand, within SMa1358at 745.220 kb on - strand, within SMa1358at 745.325 kb on + strandat 745.325 kb on + strandat 745.325 kb on + strandat 745.325 kb on + strandat 745.326 kb on - strandat 745.326 kb on - strandat 745.326 kb on - strandat 745.467 kb on + strandat 745.563 kb on - strandat 745.581 kb on - strandat 745.591 kb on - strandat 745.609 kb on + strandat 745.610 kb on - strandat 745.729 kb on + strand, within SMa1361at 745.729 kb on + strand, within SMa1361at 745.730 kb on - strand, within SMa1361at 745.773 kb on - strandat 745.773 kb on - strandat 745.870 kb on + strandat 745.870 kb on + strandat 745.871 kb on - strandat 745.956 kb on + strandat 745.957 kb on - strandat 745.957 kb on - strandat 746.140 kb on - strandat 746.200 kb on + strandat 746.200 kb on + strandat 746.200 kb on + strandat 746.200 kb on + strandat 746.200 kb on + strandat 746.340 kb on + strand, within SMa1362at 746.341 kb on - strand, within SMa1362at 746.487 kb on - strand, within SMa1362at 746.488 kb on + strand, within SMa1362at 746.488 kb on + strand, within SMa1362at 746.489 kb on - strand, within SMa1362at 746.535 kb on + strand, within SMa1362at 746.607 kb on + strand, within SMa1362at 746.607 kb on + strand, within SMa1362at 746.654 kb on - strand, within SMa1362at 746.813 kb on + strand, within SMa1362at 746.814 kb on - strand, within SMa1362at 746.871 kb on + strand, within SMa1362at 746.884 kb on + strand, within SMa1362at 747.024 kb on - strand, within SMa1362at 747.044 kb on + strand, within SMa1362at 747.045 kb on - strand, within SMa1362at 747.045 kb on - strand, within SMa1362at 747.061 kb on + strand, within SMa1362at 747.062 kb on - strand, within SMa1362at 747.182 kb on - strand, within SMa1362at 747.257 kb on + strand, within SMa1362at 747.257 kb on + strand, within SMa1362at 747.258 kb on - strand, within SMa1362at 747.278 kb on - strand, within SMa1362at 747.397 kb on + strand, within SMa1362at 747.442 kb on - strand, within SMa1362at 747.444 kb on - strand, within SMa1362at 747.444 kb on - strand, within SMa1362at 747.499 kb on + strandat 747.499 kb on + strandat 747.500 kb on - strandat 747.501 kb on + strandat 747.652 kb on + strandat 747.653 kb on - strandat 747.653 kb on - strandat 747.730 kb on - strand, within SMa1363at 747.735 kb on + strand, within SMa1363at 747.736 kb on - strand, within SMa1363at 747.738 kb on + strand, within SMa1363at 747.779 kb on + strand, within SMa1363at 747.806 kb on + strand, within SMa1363at 747.807 kb on - strand, within SMa1363at 747.807 kb on - strand, within SMa1363at 747.869 kb on + strand, within SMa1363at 747.869 kb on + strand, within SMa1363at 747.869 kb on + strand, within SMa1363at 747.869 kb on + strand, within SMa1363at 747.869 kb on + strand, within SMa1363at 747.870 kb on - strand, within SMa1363at 747.921 kb on + strand, within SMa1363at 747.922 kb on - strand, within SMa1363at 747.924 kb on - strand, within SMa1363at 747.998 kb on + strand, within SMa1363at 748.052 kb on + strand, within SMa1363at 748.072 kb on + strand, within SMa1363at 748.072 kb on + strand, within SMa1363at 748.072 kb on + strand, within SMa1363at 748.072 kb on + strand, within SMa1363at 748.072 kb on + strand, within SMa1363at 748.183 kb on - strand, within SMa1363at 748.183 kb on - strand, within SMa1363at 748.522 kb on - strand, within SMa1363

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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745,205 - SMa1358 0.78 -0.2
745,217 - SMa1358 0.81 -0.2
745,217 - SMa1358 0.81 -0.1
745,217 - SMa1358 0.81 -0.2
745,219 + SMa1358 0.82 -0.1
745,220 - SMa1358 0.82 -0.1
745,220 - SMa1358 0.82 -0.1
745,220 - SMa1358 0.82 -0.3
745,325 + +0.2
745,325 + +1.2
745,325 + +0.2
745,325 + -0.3
745,326 - -0.2
745,326 - -0.4
745,326 - +0.0
745,467 + -0.1
745,563 - +0.3
745,581 - -0.6
745,591 - -0.0
745,609 + -0.5
745,610 - +1.2
745,729 + SMa1361 0.66 -0.5
745,729 + SMa1361 0.66 -1.0
745,730 - SMa1361 0.67 +1.0
745,773 - +0.1
745,773 - -0.5
745,870 + -0.2
745,870 + +0.1
745,871 - +0.4
745,956 + +0.1
745,957 - -0.2
745,957 - +0.2
746,140 - -0.4
746,200 + +0.3
746,200 + -1.4
746,200 + -0.1
746,200 + -0.2
746,200 + +0.2
746,340 + SMa1362 0.10 +0.4
746,341 - SMa1362 0.10 -0.1
746,487 - SMa1362 0.21 -0.3
746,488 + SMa1362 0.21 -0.3
746,488 + SMa1362 0.21 -1.0
746,489 - SMa1362 0.21 -0.4
746,535 + SMa1362 0.24 +0.6
746,607 + SMa1362 0.29 +0.8
746,607 + SMa1362 0.29 -1.4
746,654 - SMa1362 0.32 -1.0
746,813 + SMa1362 0.44 -0.6
746,814 - SMa1362 0.44 -0.3
746,871 + SMa1362 0.48 +0.6
746,884 + SMa1362 0.49 +0.9
747,024 - SMa1362 0.59 +0.2
747,044 + SMa1362 0.60 +0.6
747,045 - SMa1362 0.60 -1.0
747,045 - SMa1362 0.60 -0.5
747,061 + SMa1362 0.62 -0.1
747,062 - SMa1362 0.62 -0.9
747,182 - SMa1362 0.70 -0.3
747,257 + SMa1362 0.76 -0.0
747,257 + SMa1362 0.76 -0.3
747,258 - SMa1362 0.76 -0.2
747,278 - SMa1362 0.77 -1.0
747,397 + SMa1362 0.86 +1.2
747,442 - SMa1362 0.89 -0.6
747,444 - SMa1362 0.89 +0.2
747,444 - SMa1362 0.89 -0.4
747,499 + -0.3
747,499 + -0.0
747,500 - -0.7
747,501 + -0.2
747,652 + -1.3
747,653 - -0.6
747,653 - +1.1
747,730 - SMa1363 0.12 -0.9
747,735 + SMa1363 0.13 +0.0
747,736 - SMa1363 0.13 -0.0
747,738 + SMa1363 0.13 +0.3
747,779 + SMa1363 0.17 -0.2
747,806 + SMa1363 0.19 +0.5
747,807 - SMa1363 0.19 -0.3
747,807 - SMa1363 0.19 +0.1
747,869 + SMa1363 0.25 +1.8
747,869 + SMa1363 0.25 -0.0
747,869 + SMa1363 0.25 -0.2
747,869 + SMa1363 0.25 -0.2
747,869 + SMa1363 0.25 +0.2
747,870 - SMa1363 0.25 +0.2
747,921 + SMa1363 0.30 +2.4
747,922 - SMa1363 0.30 +1.1
747,924 - SMa1363 0.30 -0.4
747,998 + SMa1363 0.37 -0.6
748,052 + SMa1363 0.42 +0.8
748,072 + SMa1363 0.44 +0.9
748,072 + SMa1363 0.44 +0.3
748,072 + SMa1363 0.44 -0.4
748,072 + SMa1363 0.44 -0.2
748,072 + SMa1363 0.44 -0.6
748,183 - SMa1363 0.54 -0.1
748,183 - SMa1363 0.54 +0.4
748,522 - SMa1363 0.85 -0.7

Or see this region's nucleotide sequence