Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21269

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21267 and SM_b21268 are separated by 151 nucleotidesSM_b21268 and SM_b21269 overlap by 53 nucleotidesSM_b21269 and SM_b21270 are separated by 96 nucleotidesSM_b21270 and SM_b21271 are separated by 83 nucleotides SM_b21267: SM_b21267 - hypothetical protein, at 840,855 to 841,532 _b21267 SM_b21268: SM_b21268 - hypothetical protein, at 841,684 to 842,397 _b21268 SM_b21269: SM_b21269 - ABC transporter ATPase, at 842,345 to 844,435 _b21269 SM_b21270: SM_b21270 - transcriptional regulator, at 844,532 to 844,996 _b21270 SM_b21271: SM_b21271 - nucleotide-binding protein, at 845,080 to 845,829 _b21271 Position (kb) 842 843 844 845Strain fitness (log2 ratio) -2 -1 0 1 2at 841.459 kb on + strand, within SM_b21267at 841.459 kb on + strand, within SM_b21267at 841.460 kb on - strandat 841.526 kb on + strandat 841.526 kb on + strandat 841.527 kb on - strandat 841.527 kb on - strandat 841.527 kb on - strandat 841.527 kb on - strandat 841.538 kb on + strandat 841.538 kb on + strandat 841.545 kb on + strandat 841.545 kb on + strandat 841.545 kb on + strandat 841.546 kb on - strandat 841.663 kb on + strandat 841.704 kb on + strandat 841.704 kb on + strandat 841.705 kb on - strandat 841.705 kb on - strandat 841.744 kb on + strandat 841.744 kb on + strandat 841.782 kb on - strand, within SM_b21268at 841.813 kb on + strand, within SM_b21268at 841.814 kb on - strand, within SM_b21268at 842.041 kb on + strand, within SM_b21268at 842.042 kb on - strand, within SM_b21268at 842.043 kb on + strand, within SM_b21268at 842.043 kb on + strand, within SM_b21268at 842.043 kb on + strand, within SM_b21268at 842.049 kb on + strand, within SM_b21268at 842.049 kb on + strand, within SM_b21268at 842.049 kb on + strand, within SM_b21268at 842.050 kb on - strand, within SM_b21268at 842.050 kb on - strand, within SM_b21268at 842.053 kb on + strand, within SM_b21268at 842.054 kb on - strand, within SM_b21268at 842.054 kb on - strand, within SM_b21268at 842.336 kb on - strandat 842.455 kb on + strandat 842.456 kb on - strandat 842.456 kb on - strandat 842.517 kb on - strandat 842.525 kb on + strandat 842.526 kb on - strandat 842.591 kb on + strand, within SM_b21269at 842.592 kb on - strand, within SM_b21269at 842.607 kb on - strand, within SM_b21269at 842.663 kb on + strand, within SM_b21269at 842.732 kb on - strandat 842.732 kb on - strand, within SM_b21269at 842.735 kb on + strand, within SM_b21269at 843.010 kb on - strand, within SM_b21269at 843.022 kb on + strand, within SM_b21269at 843.024 kb on + strand, within SM_b21269at 843.024 kb on + strand, within SM_b21269at 843.025 kb on - strand, within SM_b21269at 843.025 kb on - strand, within SM_b21269at 843.060 kb on + strand, within SM_b21269at 843.061 kb on - strand, within SM_b21269at 843.065 kb on + strand, within SM_b21269at 843.251 kb on + strand, within SM_b21269at 843.482 kb on + strand, within SM_b21269at 843.482 kb on + strand, within SM_b21269at 843.483 kb on - strand, within SM_b21269at 843.483 kb on - strand, within SM_b21269at 843.588 kb on + strand, within SM_b21269at 843.617 kb on + strand, within SM_b21269at 843.754 kb on - strand, within SM_b21269at 843.754 kb on - strand, within SM_b21269at 843.822 kb on - strand, within SM_b21269at 843.942 kb on - strand, within SM_b21269at 843.942 kb on - strand, within SM_b21269at 843.957 kb on - strand, within SM_b21269at 843.957 kb on - strand, within SM_b21269at 843.957 kb on - strand, within SM_b21269at 844.076 kb on + strand, within SM_b21269at 844.078 kb on + strand, within SM_b21269at 844.079 kb on - strand, within SM_b21269at 844.196 kb on + strand, within SM_b21269at 844.299 kb on + strandat 844.416 kb on - strandat 844.416 kb on - strandat 844.416 kb on - strandat 844.438 kb on + strandat 844.438 kb on + strandat 844.438 kb on + strandat 844.438 kb on + strandat 844.439 kb on - strandat 844.439 kb on - strandat 844.439 kb on - strandat 844.439 kb on - strandat 844.439 kb on - strandat 844.441 kb on + strandat 844.441 kb on + strandat 844.442 kb on - strandat 844.442 kb on - strandat 844.442 kb on - strandat 844.463 kb on + strandat 844.463 kb on + strandat 844.463 kb on + strandat 844.464 kb on - strandat 844.464 kb on - strandat 844.464 kb on - strandat 844.532 kb on - strandat 844.539 kb on + strandat 844.638 kb on - strand, within SM_b21270at 844.688 kb on + strand, within SM_b21270at 844.688 kb on + strand, within SM_b21270at 844.689 kb on - strand, within SM_b21270at 845.068 kb on + strandat 845.069 kb on - strandat 845.096 kb on - strandat 845.096 kb on - strandat 845.113 kb on + strandat 845.224 kb on + strand, within SM_b21271at 845.225 kb on - strand, within SM_b21271at 845.225 kb on - strand, within SM_b21271at 845.227 kb on - strand, within SM_b21271

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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841,459 + SM_b21267 0.89 -0.1
841,459 + SM_b21267 0.89 +0.6
841,460 - +1.8
841,526 + +0.2
841,526 + -0.3
841,527 - +0.8
841,527 - +0.8
841,527 - +0.3
841,527 - +1.8
841,538 + +0.6
841,538 + -0.5
841,545 + +1.0
841,545 + -0.9
841,545 + +0.2
841,546 - +1.8
841,663 + +0.1
841,704 + -1.5
841,704 + -0.3
841,705 - +0.6
841,705 - -0.1
841,744 + +0.8
841,744 + -0.2
841,782 - SM_b21268 0.14 -1.4
841,813 + SM_b21268 0.18 -2.2
841,814 - SM_b21268 0.18 -1.5
842,041 + SM_b21268 0.50 -1.2
842,042 - SM_b21268 0.50 -1.7
842,043 + SM_b21268 0.50 -1.2
842,043 + SM_b21268 0.50 +1.2
842,043 + SM_b21268 0.50 -2.4
842,049 + SM_b21268 0.51 -0.3
842,049 + SM_b21268 0.51 -1.0
842,049 + SM_b21268 0.51 -2.1
842,050 - SM_b21268 0.51 -1.4
842,050 - SM_b21268 0.51 -1.0
842,053 + SM_b21268 0.52 -2.3
842,054 - SM_b21268 0.52 -1.0
842,054 - SM_b21268 0.52 -1.7
842,336 - -1.3
842,455 + -1.6
842,456 - -0.1
842,456 - -2.1
842,517 - +1.4
842,525 + -1.3
842,526 - -1.2
842,591 + SM_b21269 0.12 -0.2
842,592 - SM_b21269 0.12 -0.4
842,607 - SM_b21269 0.13 -1.5
842,663 + SM_b21269 0.15 -1.5
842,732 - +1.8
842,732 - SM_b21269 0.19 -0.7
842,735 + SM_b21269 0.19 -2.2
843,010 - SM_b21269 0.32 -1.5
843,022 + SM_b21269 0.32 -0.8
843,024 + SM_b21269 0.32 -0.7
843,024 + SM_b21269 0.32 +0.8
843,025 - SM_b21269 0.33 -2.6
843,025 - SM_b21269 0.33 -1.4
843,060 + SM_b21269 0.34 -1.4
843,061 - SM_b21269 0.34 -1.0
843,065 + SM_b21269 0.34 -1.5
843,251 + SM_b21269 0.43 -2.4
843,482 + SM_b21269 0.54 -2.0
843,482 + SM_b21269 0.54 -1.5
843,483 - SM_b21269 0.54 +0.2
843,483 - SM_b21269 0.54 -1.3
843,588 + SM_b21269 0.59 -1.9
843,617 + SM_b21269 0.61 -2.0
843,754 - SM_b21269 0.67 -0.8
843,754 - SM_b21269 0.67 -1.9
843,822 - SM_b21269 0.71 -2.3
843,942 - SM_b21269 0.76 -0.7
843,942 - SM_b21269 0.76 -1.9
843,957 - SM_b21269 0.77 -1.0
843,957 - SM_b21269 0.77 -1.8
843,957 - SM_b21269 0.77 -1.3
844,076 + SM_b21269 0.83 -1.4
844,078 + SM_b21269 0.83 -1.1
844,079 - SM_b21269 0.83 +0.2
844,196 + SM_b21269 0.89 -1.1
844,299 + -1.2
844,416 - -0.3
844,416 - -0.3
844,416 - +0.8
844,438 + -0.5
844,438 + -0.5
844,438 + -0.5
844,438 + +0.5
844,439 - +0.3
844,439 - +0.6
844,439 - +0.0
844,439 - -1.1
844,439 - -1.0
844,441 + -0.9
844,441 + +1.5
844,442 - -0.4
844,442 - +1.8
844,442 - +0.1
844,463 + +0.2
844,463 + -0.3
844,463 + -0.5
844,464 - -0.9
844,464 - +0.3
844,464 - -0.1
844,532 - +0.0
844,539 + +0.5
844,638 - SM_b21270 0.23 +0.3
844,688 + SM_b21270 0.34 -0.8
844,688 + SM_b21270 0.34 +0.0
844,689 - SM_b21270 0.34 -0.5
845,068 + +0.2
845,069 - +0.2
845,096 - +2.1
845,096 - +0.5
845,113 + +1.1
845,224 + SM_b21271 0.19 +0.3
845,225 - SM_b21271 0.19 +0.3
845,225 - SM_b21271 0.19 +0.8
845,227 - SM_b21271 0.20 +0.0

Or see this region's nucleotide sequence