Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21003 and SM_b21004 are separated by 108 nucleotides SM_b21004 and SM_b21005 are separated by 21 nucleotides SM_b21005 and SM_b21006 are separated by 9 nucleotides SM_b21006 and SM_b21007 are separated by 37 nucleotides
SM_b21003: SM_b21003 - oxidoreductase, at 1,238,942 to 1,239,985
_b21003
SM_b21004: SM_b21004 - hypothetical protein, at 1,240,094 to 1,240,540
_b21004
SM_b21005: SM_b21005 - hypothetical protein, at 1,240,562 to 1,241,029
_b21005
SM_b21006: SM_b21006 - hypothetical protein, at 1,241,039 to 1,241,281
_b21006
SM_b21007: SM_b21007 - hypothetical protein, at 1,241,319 to 1,241,738
_b21007
Position (kb)
1240
1241 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1239.238 kb on - strand, within SM_b21003 at 1239.553 kb on + strand, within SM_b21003 at 1239.603 kb on + strand, within SM_b21003 at 1239.604 kb on - strand, within SM_b21003 at 1239.604 kb on - strand, within SM_b21003 at 1239.967 kb on + strand at 1239.968 kb on - strand at 1239.968 kb on - strand at 1240.023 kb on + strand at 1240.024 kb on - strand at 1240.139 kb on + strand, within SM_b21004 at 1240.144 kb on + strand, within SM_b21004 at 1240.144 kb on + strand, within SM_b21004 at 1240.145 kb on - strand, within SM_b21004 at 1240.317 kb on + strand, within SM_b21004 at 1240.318 kb on - strand, within SM_b21004 at 1240.337 kb on + strand, within SM_b21004 at 1240.567 kb on + strand at 1240.567 kb on + strand at 1240.568 kb on - strand at 1240.568 kb on - strand at 1240.568 kb on - strand at 1240.639 kb on - strand, within SM_b21005 at 1240.651 kb on - strand, within SM_b21005 at 1240.655 kb on + strand, within SM_b21005 at 1240.655 kb on + strand, within SM_b21005 at 1240.655 kb on + strand, within SM_b21005 at 1240.655 kb on + strand, within SM_b21005 at 1240.655 kb on + strand, within SM_b21005 at 1240.656 kb on - strand, within SM_b21005 at 1240.656 kb on - strand, within SM_b21005 at 1240.656 kb on - strand, within SM_b21005 at 1240.656 kb on - strand, within SM_b21005 at 1240.656 kb on - strand, within SM_b21005 at 1240.666 kb on - strand, within SM_b21005 at 1240.728 kb on + strand, within SM_b21005 at 1240.779 kb on + strand, within SM_b21005 at 1240.780 kb on - strand, within SM_b21005 at 1240.891 kb on - strand, within SM_b21005 at 1240.891 kb on - strand, within SM_b21005 at 1240.891 kb on - strand, within SM_b21005 at 1241.079 kb on + strand, within SM_b21006 at 1241.095 kb on + strand, within SM_b21006 at 1241.095 kb on + strand, within SM_b21006 at 1241.095 kb on + strand, within SM_b21006 at 1241.095 kb on + strand, within SM_b21006 at 1241.096 kb on - strand, within SM_b21006 at 1241.096 kb on - strand, within SM_b21006 at 1241.096 kb on - strand, within SM_b21006 at 1241.096 kb on - strand, within SM_b21006 at 1241.097 kb on + strand, within SM_b21006 at 1241.097 kb on + strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.098 kb on - strand, within SM_b21006 at 1241.153 kb on + strand, within SM_b21006 at 1241.240 kb on + strand, within SM_b21006 at 1241.240 kb on + strand, within SM_b21006 at 1241.240 kb on + strand, within SM_b21006 at 1241.241 kb on - strand, within SM_b21006 at 1241.241 kb on - strand, within SM_b21006 at 1241.241 kb on - strand, within SM_b21006 at 1241.241 kb on - strand, within SM_b21006 at 1241.524 kb on + strand, within SM_b21007 at 1241.525 kb on - strand, within SM_b21007
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM remove 1,239,238 - SM_b21003 0.28 +0.7 1,239,553 + SM_b21003 0.59 +0.4 1,239,603 + SM_b21003 0.63 +1.8 1,239,604 - SM_b21003 0.63 -0.1 1,239,604 - SM_b21003 0.63 -0.1 1,239,967 + -0.8 1,239,968 - +0.0 1,239,968 - -0.1 1,240,023 + +0.8 1,240,024 - +1.8 1,240,139 + SM_b21004 0.10 -0.2 1,240,144 + SM_b21004 0.11 -1.0 1,240,144 + SM_b21004 0.11 -0.6 1,240,145 - SM_b21004 0.11 -0.1 1,240,317 + SM_b21004 0.50 -0.7 1,240,318 - SM_b21004 0.50 -0.5 1,240,337 + SM_b21004 0.54 -0.6 1,240,567 + -3.1 1,240,567 + +0.3 1,240,568 - +0.8 1,240,568 - -0.7 1,240,568 - +0.2 1,240,639 - SM_b21005 0.16 +0.7 1,240,651 - SM_b21005 0.19 +0.4 1,240,655 + SM_b21005 0.20 +0.8 1,240,655 + SM_b21005 0.20 -0.9 1,240,655 + SM_b21005 0.20 +0.1 1,240,655 + SM_b21005 0.20 +0.3 1,240,655 + SM_b21005 0.20 +0.5 1,240,656 - SM_b21005 0.20 -0.0 1,240,656 - SM_b21005 0.20 -0.5 1,240,656 - SM_b21005 0.20 -0.6 1,240,656 - SM_b21005 0.20 -0.1 1,240,656 - SM_b21005 0.20 +0.1 1,240,666 - SM_b21005 0.22 +0.4 1,240,728 + SM_b21005 0.35 -3.1 1,240,779 + SM_b21005 0.46 +0.2 1,240,780 - SM_b21005 0.47 +0.0 1,240,891 - SM_b21005 0.70 +1.0 1,240,891 - SM_b21005 0.70 +1.2 1,240,891 - SM_b21005 0.70 -0.2 1,241,079 + SM_b21006 0.16 +0.7 1,241,095 + SM_b21006 0.23 -0.3 1,241,095 + SM_b21006 0.23 -1.7 1,241,095 + SM_b21006 0.23 -0.3 1,241,095 + SM_b21006 0.23 -0.2 1,241,096 - SM_b21006 0.23 -0.0 1,241,096 - SM_b21006 0.23 -0.5 1,241,096 - SM_b21006 0.23 +0.5 1,241,096 - SM_b21006 0.23 -0.3 1,241,097 + SM_b21006 0.24 -0.0 1,241,097 + SM_b21006 0.24 -0.1 1,241,098 - SM_b21006 0.24 -0.3 1,241,098 - SM_b21006 0.24 -1.6 1,241,098 - SM_b21006 0.24 -0.5 1,241,098 - SM_b21006 0.24 -0.2 1,241,098 - SM_b21006 0.24 +0.3 1,241,098 - SM_b21006 0.24 -0.3 1,241,098 - SM_b21006 0.24 -0.9 1,241,153 + SM_b21006 0.47 -0.3 1,241,240 + SM_b21006 0.83 -3.0 1,241,240 + SM_b21006 0.83 -0.0 1,241,240 + SM_b21006 0.83 +0.3 1,241,241 - SM_b21006 0.83 +0.2 1,241,241 - SM_b21006 0.83 +0.2 1,241,241 - SM_b21006 0.83 +0.2 1,241,241 - SM_b21006 0.83 +0.3 1,241,524 + SM_b21007 0.49 -0.5 1,241,525 - SM_b21007 0.49 -0.1
Or see this region's nucleotide sequence