Experiment: 6-Pentyl-2H-pyran-2-one 0.4177863333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21503 and SM_b21504 are separated by 10 nucleotides SM_b21504 and SM_b21505 overlap by 8 nucleotides SM_b21505 and SM_b21506 are separated by 12 nucleotides
SM_b21503: SM_b21503 - glycosyltransferase, at 1,427,874 to 1,429,217
_b21503
SM_b21504: SM_b21504 - hypothetical protein, at 1,429,228 to 1,429,983
_b21504
SM_b21505: SM_b21505 - membrane protein, Wzy-like polysaccharide polymerase ExoQ, at 1,429,976 to 1,431,307
_b21505
SM_b21506: SM_b21506 - cell surface polysaccharides export protein, at 1,431,320 to 1,432,936
_b21506
Position (kb)
1429
1430
1431
1432 Strain fitness (log2 ratio)
-2
-1
0
1 at 1429.034 kb on - strand, within SM_b21503 at 1429.034 kb on - strand, within SM_b21503 at 1429.139 kb on + strand at 1429.139 kb on + strand at 1429.139 kb on + strand at 1429.140 kb on - strand at 1429.183 kb on + strand at 1429.183 kb on + strand at 1429.183 kb on + strand at 1429.184 kb on - strand at 1429.229 kb on + strand at 1429.292 kb on + strand at 1429.293 kb on - strand at 1429.331 kb on + strand, within SM_b21504 at 1429.332 kb on - strand, within SM_b21504 at 1429.332 kb on - strand, within SM_b21504 at 1429.566 kb on - strand, within SM_b21504 at 1429.784 kb on - strand, within SM_b21504 at 1429.784 kb on - strand, within SM_b21504 at 1429.784 kb on - strand, within SM_b21504 at 1429.785 kb on + strand, within SM_b21504 at 1429.787 kb on + strand, within SM_b21504 at 1429.787 kb on + strand, within SM_b21504 at 1429.787 kb on + strand, within SM_b21504 at 1429.787 kb on + strand, within SM_b21504 at 1429.787 kb on + strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.808 kb on + strand, within SM_b21504 at 1429.808 kb on + strand, within SM_b21504 at 1429.809 kb on - strand, within SM_b21504 at 1429.809 kb on - strand, within SM_b21504 at 1429.809 kb on - strand, within SM_b21504 at 1429.988 kb on + strand at 1430.055 kb on + strand at 1430.056 kb on - strand at 1430.056 kb on - strand at 1430.137 kb on - strand, within SM_b21505 at 1430.145 kb on - strand, within SM_b21505 at 1430.150 kb on + strand, within SM_b21505 at 1430.151 kb on - strand, within SM_b21505 at 1430.341 kb on - strand, within SM_b21505 at 1430.380 kb on - strand, within SM_b21505 at 1430.380 kb on - strand, within SM_b21505 at 1430.706 kb on + strand, within SM_b21505 at 1430.707 kb on - strand, within SM_b21505 at 1430.707 kb on - strand, within SM_b21505 at 1430.850 kb on + strand, within SM_b21505 at 1430.851 kb on - strand, within SM_b21505 at 1430.853 kb on + strand, within SM_b21505 at 1430.854 kb on - strand, within SM_b21505 at 1430.931 kb on + strand, within SM_b21505 at 1430.932 kb on - strand, within SM_b21505 at 1430.932 kb on - strand, within SM_b21505 at 1431.434 kb on - strand at 1431.550 kb on - strand, within SM_b21506 at 1431.793 kb on - strand, within SM_b21506 at 1431.793 kb on - strand, within SM_b21506 at 1431.796 kb on + strand, within SM_b21506 at 1431.796 kb on + strand, within SM_b21506 at 1431.832 kb on + strand, within SM_b21506 at 1431.834 kb on + strand, within SM_b21506 at 1431.834 kb on + strand, within SM_b21506 at 1431.835 kb on - strand, within SM_b21506 at 1431.835 kb on - strand, within SM_b21506 at 1432.295 kb on + strand, within SM_b21506 at 1432.295 kb on + strand, within SM_b21506
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4177863333 mM remove 1,429,034 - SM_b21503 0.86 -0.1 1,429,034 - SM_b21503 0.86 +1.2 1,429,139 + -0.2 1,429,139 + +0.2 1,429,139 + -0.0 1,429,140 - -1.0 1,429,183 + -0.6 1,429,183 + +0.5 1,429,183 + -0.8 1,429,184 - +1.1 1,429,229 + +0.6 1,429,292 + +0.4 1,429,293 - +0.0 1,429,331 + SM_b21504 0.14 -0.5 1,429,332 - SM_b21504 0.14 +1.0 1,429,332 - SM_b21504 0.14 +0.5 1,429,566 - SM_b21504 0.45 +0.0 1,429,784 - SM_b21504 0.74 -0.3 1,429,784 - SM_b21504 0.74 -0.6 1,429,784 - SM_b21504 0.74 -1.0 1,429,785 + SM_b21504 0.74 -0.1 1,429,787 + SM_b21504 0.74 +0.2 1,429,787 + SM_b21504 0.74 +0.3 1,429,787 + SM_b21504 0.74 +1.3 1,429,787 + SM_b21504 0.74 +0.9 1,429,787 + SM_b21504 0.74 +0.6 1,429,788 - SM_b21504 0.74 -0.3 1,429,788 - SM_b21504 0.74 -0.1 1,429,788 - SM_b21504 0.74 +1.0 1,429,788 - SM_b21504 0.74 +0.2 1,429,788 - SM_b21504 0.74 +0.7 1,429,788 - SM_b21504 0.74 -0.4 1,429,808 + SM_b21504 0.77 -0.2 1,429,808 + SM_b21504 0.77 +1.0 1,429,809 - SM_b21504 0.77 -0.8 1,429,809 - SM_b21504 0.77 +0.2 1,429,809 - SM_b21504 0.77 +1.1 1,429,988 + -0.3 1,430,055 + -0.7 1,430,056 - +1.2 1,430,056 - -0.1 1,430,137 - SM_b21505 0.12 +0.1 1,430,145 - SM_b21505 0.13 +0.4 1,430,150 + SM_b21505 0.13 -1.2 1,430,151 - SM_b21505 0.13 -0.2 1,430,341 - SM_b21505 0.27 -1.6 1,430,380 - SM_b21505 0.30 +0.1 1,430,380 - SM_b21505 0.30 +0.4 1,430,706 + SM_b21505 0.55 -0.7 1,430,707 - SM_b21505 0.55 -1.0 1,430,707 - SM_b21505 0.55 -0.4 1,430,850 + SM_b21505 0.66 -0.2 1,430,851 - SM_b21505 0.66 -0.5 1,430,853 + SM_b21505 0.66 -0.4 1,430,854 - SM_b21505 0.66 -0.5 1,430,931 + SM_b21505 0.72 +0.0 1,430,932 - SM_b21505 0.72 -0.5 1,430,932 - SM_b21505 0.72 +0.4 1,431,434 - +0.3 1,431,550 - SM_b21506 0.14 -0.6 1,431,793 - SM_b21506 0.29 +0.4 1,431,793 - SM_b21506 0.29 -2.0 1,431,796 + SM_b21506 0.29 +0.8 1,431,796 + SM_b21506 0.29 -0.3 1,431,832 + SM_b21506 0.32 +0.3 1,431,834 + SM_b21506 0.32 -0.8 1,431,834 + SM_b21506 0.32 +0.0 1,431,835 - SM_b21506 0.32 -0.6 1,431,835 - SM_b21506 0.32 +0.7 1,432,295 + SM_b21506 0.60 -0.0 1,432,295 + SM_b21506 0.60 +0.6
Or see this region's nucleotide sequence