Experiment: 6-Pentyl-2H-pyran-2-one 0.4177863333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20390 and SM_b20391 overlap by 19 nucleotides SM_b20391 and SM_b20392 are separated by 35 nucleotides SM_b20392 and SM_b20393 are separated by 144 nucleotides
SM_b20390: SM_b20390 - hypothetical protein, at 402,436 to 403,668
_b20390
SM_b20391: SM_b20391 - cellulose synthase catalytic subunit protein, at 403,650 to 405,644
_b20391
SM_b20392: SM_b20392 - transcriptional regulator NanR, at 405,680 to 406,387
_b20392
SM_b20393: SM_b20393 - ribulose bisphosphate carboxylaseoxygenase, large subunit protein, at 406,532 to 407,788
_b20393
Position (kb) 403
404
405
406 Strain fitness (log2 ratio) -2
-1
0
1 at 403.053 kb on - strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.212 kb on - strand, within SM_b20390 at 403.367 kb on - strand, within SM_b20390 at 403.379 kb on - strand, within SM_b20390 at 403.666 kb on + strand at 403.788 kb on + strand at 403.788 kb on + strand at 403.788 kb on + strand at 403.789 kb on - strand at 403.926 kb on + strand, within SM_b20391 at 403.926 kb on + strand, within SM_b20391 at 403.926 kb on + strand, within SM_b20391 at 404.022 kb on + strand, within SM_b20391 at 404.023 kb on - strand, within SM_b20391 at 404.023 kb on - strand, within SM_b20391 at 404.025 kb on - strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.104 kb on - strand, within SM_b20391 at 404.104 kb on - strand, within SM_b20391 at 404.269 kb on + strand, within SM_b20391 at 404.274 kb on + strand, within SM_b20391 at 404.274 kb on + strand, within SM_b20391 at 404.275 kb on - strand, within SM_b20391 at 404.395 kb on + strand at 404.396 kb on - strand, within SM_b20391 at 404.396 kb on - strand, within SM_b20391 at 404.691 kb on + strand, within SM_b20391 at 404.692 kb on - strand, within SM_b20391 at 404.776 kb on - strand, within SM_b20391 at 404.776 kb on - strand, within SM_b20391 at 404.807 kb on + strand, within SM_b20391 at 404.808 kb on - strand, within SM_b20391 at 404.896 kb on - strand, within SM_b20391 at 404.896 kb on - strand, within SM_b20391 at 404.932 kb on - strand, within SM_b20391 at 404.960 kb on + strand, within SM_b20391 at 405.078 kb on + strand, within SM_b20391 at 405.079 kb on - strand, within SM_b20391 at 405.080 kb on + strand, within SM_b20391 at 405.081 kb on - strand, within SM_b20391 at 405.483 kb on + strand at 405.483 kb on + strand at 405.483 kb on + strand at 405.484 kb on - strand at 405.484 kb on - strand at 405.487 kb on - strand at 405.501 kb on + strand at 405.501 kb on + strand at 405.502 kb on - strand at 405.547 kb on - strand at 405.681 kb on + strand at 405.681 kb on + strand at 405.682 kb on - strand at 405.682 kb on - strand at 405.682 kb on - strand at 405.699 kb on + strand at 405.700 kb on - strand at 405.803 kb on + strand, within SM_b20392 at 405.804 kb on - strand, within SM_b20392 at 405.886 kb on - strand, within SM_b20392 at 405.887 kb on + strand, within SM_b20392 at 406.076 kb on + strand, within SM_b20392 at 406.076 kb on + strand, within SM_b20392 at 406.077 kb on - strand, within SM_b20392 at 406.207 kb on + strand, within SM_b20392 at 406.208 kb on - strand, within SM_b20392 at 406.208 kb on - strand, within SM_b20392 at 406.517 kb on + strand at 406.517 kb on + strand at 406.518 kb on - strand at 406.536 kb on + strand at 406.536 kb on + strand at 406.547 kb on + strand at 406.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4177863333 mM remove 403,053 - SM_b20390 0.50 -0.3 403,087 + SM_b20390 0.53 -0.2 403,087 + SM_b20390 0.53 -0.1 403,087 + SM_b20390 0.53 -0.5 403,212 - SM_b20390 0.63 -0.0 403,367 - SM_b20390 0.76 -0.2 403,379 - SM_b20390 0.76 -0.3 403,666 + -0.2 403,788 + -1.0 403,788 + +0.8 403,788 + +0.6 403,789 - +0.1 403,926 + SM_b20391 0.14 -0.6 403,926 + SM_b20391 0.14 +0.2 403,926 + SM_b20391 0.14 +0.2 404,022 + SM_b20391 0.19 +0.4 404,023 - SM_b20391 0.19 +0.2 404,023 - SM_b20391 0.19 +0.5 404,025 - SM_b20391 0.19 -0.2 404,103 + SM_b20391 0.23 +0.1 404,103 + SM_b20391 0.23 +0.9 404,103 + SM_b20391 0.23 -0.9 404,104 - SM_b20391 0.23 +0.3 404,104 - SM_b20391 0.23 -0.9 404,269 + SM_b20391 0.31 -0.2 404,274 + SM_b20391 0.31 +0.3 404,274 + SM_b20391 0.31 +0.8 404,275 - SM_b20391 0.31 +0.2 404,395 + +1.4 404,396 - SM_b20391 0.37 +0.3 404,396 - SM_b20391 0.37 -0.6 404,691 + SM_b20391 0.52 +0.5 404,692 - SM_b20391 0.52 +0.2 404,776 - SM_b20391 0.56 +0.1 404,776 - SM_b20391 0.56 +0.1 404,807 + SM_b20391 0.58 +0.3 404,808 - SM_b20391 0.58 -0.5 404,896 - SM_b20391 0.62 -1.4 404,896 - SM_b20391 0.62 -0.1 404,932 - SM_b20391 0.64 -1.9 404,960 + SM_b20391 0.66 +0.9 405,078 + SM_b20391 0.72 +0.4 405,079 - SM_b20391 0.72 +0.3 405,080 + SM_b20391 0.72 +1.5 405,081 - SM_b20391 0.72 +0.0 405,483 + -0.6 405,483 + -0.2 405,483 + -0.1 405,484 - +0.2 405,484 - +0.5 405,487 - -1.4 405,501 + -0.0 405,501 + -0.3 405,502 - -0.5 405,547 - -0.4 405,681 + -0.0 405,681 + +0.0 405,682 - +1.2 405,682 - -0.2 405,682 - -1.4 405,699 + +0.6 405,700 - -0.2 405,803 + SM_b20392 0.17 -0.1 405,804 - SM_b20392 0.18 -0.5 405,886 - SM_b20392 0.29 +0.1 405,887 + SM_b20392 0.29 -1.7 406,076 + SM_b20392 0.56 -0.0 406,076 + SM_b20392 0.56 +1.0 406,077 - SM_b20392 0.56 -0.6 406,207 + SM_b20392 0.74 -0.2 406,208 - SM_b20392 0.75 +0.0 406,208 - SM_b20392 0.75 -0.2 406,517 + -0.1 406,517 + +0.3 406,518 - +0.3 406,536 + -0.2 406,536 + +1.0 406,547 + +0.1 406,547 + -0.1
Or see this region's nucleotide sequence