Strain Fitness in Sinorhizobium meliloti 1021 around SMc03891

Experiment: 6-Pentyl-2H-pyran-2-one 0.4177863333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03890 and SMc03891 are separated by 270 nucleotidesSMc03891 and SMc03892 are separated by 235 nucleotides SMc03890: SMc03890 - transcriptional regulator, at 3,557,698 to 3,558,480 SMc03890 SMc03891: SMc03891 - amino acid-binding periplasmic ABC transporter protein, at 3,558,751 to 3,559,524 SMc03891 SMc03892: SMc03892 - transposase, at 3,559,760 to 3,560,836 SMc03892 Position (kb) 3558 3559 3560Strain fitness (log2 ratio) -1 0 1at 3557.820 kb on + strand, within SMc03890at 3557.903 kb on + strand, within SMc03890at 3558.109 kb on - strand, within SMc03890at 3558.205 kb on + strand, within SMc03890at 3558.205 kb on + strand, within SMc03890at 3558.526 kb on - strandat 3558.641 kb on - strandat 3558.669 kb on + strandat 3558.880 kb on + strand, within SMc03891at 3558.880 kb on + strand, within SMc03891at 3558.880 kb on + strand, within SMc03891at 3558.881 kb on - strand, within SMc03891at 3558.881 kb on - strand, within SMc03891at 3558.896 kb on - strand, within SMc03891at 3559.082 kb on - strand, within SMc03891at 3559.099 kb on + strand, within SMc03891at 3559.100 kb on - strand, within SMc03891at 3559.100 kb on - strand, within SMc03891at 3559.100 kb on - strand, within SMc03891at 3559.102 kb on - strand, within SMc03891at 3559.390 kb on + strand, within SMc03891at 3559.477 kb on + strandat 3559.477 kb on + strandat 3559.478 kb on - strandat 3559.498 kb on + strandat 3559.499 kb on - strandat 3559.656 kb on - strandat 3559.699 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4177863333 mM
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3,557,820 + SMc03890 0.16 -0.9
3,557,903 + SMc03890 0.26 -1.3
3,558,109 - SMc03890 0.52 -0.2
3,558,205 + SMc03890 0.65 +0.9
3,558,205 + SMc03890 0.65 -0.9
3,558,526 - +0.3
3,558,641 - -1.4
3,558,669 + +0.8
3,558,880 + SMc03891 0.17 +0.0
3,558,880 + SMc03891 0.17 -0.3
3,558,880 + SMc03891 0.17 -0.2
3,558,881 - SMc03891 0.17 -0.1
3,558,881 - SMc03891 0.17 -0.2
3,558,896 - SMc03891 0.19 -0.8
3,559,082 - SMc03891 0.43 -1.0
3,559,099 + SMc03891 0.45 -0.1
3,559,100 - SMc03891 0.45 -0.6
3,559,100 - SMc03891 0.45 -0.2
3,559,100 - SMc03891 0.45 -0.0
3,559,102 - SMc03891 0.45 +1.4
3,559,390 + SMc03891 0.83 +0.1
3,559,477 + +1.1
3,559,477 + -0.1
3,559,478 - -0.5
3,559,498 + -0.3
3,559,499 - -0.6
3,559,656 - +0.0
3,559,699 - -0.2

Or see this region's nucleotide sequence