Strain Fitness in Sinorhizobium meliloti 1021 around SMa1831

Experiment: 6-Pentyl-2H-pyran-2-one 0.4177863333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1828 and SMa1831 are separated by 832 nucleotidesSMa1831 and SMa1832 are separated by 63 nucleotidesSMa1832 and SMa1833 are separated by 42 nucleotides SMa1828: SMa1828 - transcriptional activator, at 1,036,363 to 1,037,514 SMa1828 SMa1831: SMa1831 - hypothetical protein, at 1,038,347 to 1,038,949 SMa1831 SMa1832: SMa1832 - hypothetical protein, at 1,039,013 to 1,039,465 SMa1832 SMa1833: SMa1833 - hypothetical protein, at 1,039,508 to 1,040,893 SMa1833 Position (kb) 1038 1039Strain fitness (log2 ratio) -1 0 1 2at 1037.608 kb on + strandat 1037.609 kb on - strandat 1037.884 kb on - strandat 1037.884 kb on - strandat 1038.105 kb on - strandat 1038.105 kb on - strandat 1038.127 kb on + strandat 1038.142 kb on + strandat 1038.375 kb on + strandat 1038.485 kb on - strand, within SMa1831at 1038.554 kb on + strand, within SMa1831at 1038.885 kb on - strand, within SMa1831at 1038.885 kb on - strand, within SMa1831at 1038.885 kb on - strand, within SMa1831at 1038.948 kb on - strandat 1038.961 kb on + strandat 1039.007 kb on + strandat 1039.008 kb on - strandat 1039.009 kb on + strandat 1039.009 kb on + strandat 1039.010 kb on - strandat 1039.119 kb on + strand, within SMa1832at 1039.148 kb on + strand, within SMa1832at 1039.266 kb on - strand, within SMa1832at 1039.314 kb on + strand, within SMa1832at 1039.314 kb on + strand, within SMa1832at 1039.315 kb on - strand, within SMa1832at 1039.315 kb on - strand, within SMa1832at 1039.526 kb on - strandat 1039.531 kb on + strandat 1039.532 kb on - strandat 1039.572 kb on + strandat 1039.573 kb on - strandat 1039.597 kb on + strandat 1039.597 kb on + strandat 1039.597 kb on + strandat 1039.914 kb on - strand, within SMa1833at 1039.914 kb on - strand, within SMa1833

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4177863333 mM
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1,037,608 + -0.4
1,037,609 - -0.3
1,037,884 - +0.0
1,037,884 - -0.1
1,038,105 - -0.3
1,038,105 - -0.1
1,038,127 + +0.5
1,038,142 + -0.4
1,038,375 + +0.3
1,038,485 - SMa1831 0.23 -0.7
1,038,554 + SMa1831 0.34 -0.6
1,038,885 - SMa1831 0.89 -1.3
1,038,885 - SMa1831 0.89 -0.5
1,038,885 - SMa1831 0.89 -0.4
1,038,948 - +1.0
1,038,961 + +0.0
1,039,007 + -0.7
1,039,008 - -0.4
1,039,009 + -0.4
1,039,009 + -0.0
1,039,010 - +0.3
1,039,119 + SMa1832 0.23 +1.0
1,039,148 + SMa1832 0.30 +0.1
1,039,266 - SMa1832 0.56 +0.4
1,039,314 + SMa1832 0.66 -0.4
1,039,314 + SMa1832 0.66 -0.7
1,039,315 - SMa1832 0.67 +0.0
1,039,315 - SMa1832 0.67 +1.9
1,039,526 - +1.2
1,039,531 + +0.2
1,039,532 - -0.1
1,039,572 + -0.0
1,039,573 - -0.7
1,039,597 + -0.0
1,039,597 + +0.3
1,039,597 + -0.1
1,039,914 - SMa1833 0.29 +0.5
1,039,914 - SMa1833 0.29 +0.1

Or see this region's nucleotide sequence