Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20380

Experiment: cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
2,392,260	+		BBR_RS20375	0.73	-0.1
2,392,265	+		BBR_RS20375	0.73	-1.5
2,392,265	+		BBR_RS20375	0.73	-2.5
2,392,269	+		BBR_RS20375	0.73	-0.4
2,392,289	+		BBR_RS20375	0.74	-1.0
2,392,297	-		BBR_RS20375	0.74	+0.8
2,392,306	+		BBR_RS20375	0.75	-0.0
2,392,308	+		BBR_RS20375	0.75	-0.5
2,392,347	-		BBR_RS20375	0.76	-1.3
2,392,347	-		BBR_RS20375	0.76	+1.5
2,392,369	-		BBR_RS20375	0.77	-2.9
2,392,397	-		BBR_RS20375	0.78	+0.1
2,392,416	+		BBR_RS20375	0.79	-0.3
2,392,420	+		BBR_RS20375	0.79	+0.3
2,392,442	-		BBR_RS20375	0.80	-1.8
2,392,457	+		BBR_RS20375	0.81	-1.1
2,392,458	-		BBR_RS20375	0.81	-0.3
2,392,458	-		BBR_RS20375	0.81	-1.0
2,392,463	-		BBR_RS20375	0.81	+1.5
2,392,465	-		BBR_RS20375	0.81	-2.8
2,392,465	-		BBR_RS20375	0.81	-2.6
2,392,477	+		BBR_RS20375	0.81	-0.1
2,392,480	+		BBR_RS20375	0.82	+0.7
2,392,480	+		BBR_RS20375	0.82	+0.3
2,392,485	-		BBR_RS20375	0.82	-0.2
2,392,485	-		BBR_RS20375	0.82	-0.0
2,392,485	-		BBR_RS20375	0.82	+0.6
2,392,485	-		BBR_RS20375	0.82	-0.8
2,392,499	-		BBR_RS20375	0.82	-2.3
2,392,500	-		BBR_RS20375	0.82	-1.4
2,392,500	-		BBR_RS20375	0.82	-1.9
2,392,501	+		BBR_RS20375	0.82	-2.0
2,392,501	+		BBR_RS20375	0.82	-2.3
2,392,509	-		BBR_RS20375	0.83	-0.0
2,392,509	-		BBR_RS20375	0.83	-1.1
2,392,509	-		BBR_RS20375	0.83	-3.1
2,392,509	-		BBR_RS20375	0.83	+0.2
2,392,511	+		BBR_RS20375	0.83	-0.6
2,392,521	+		BBR_RS20375	0.83	-3.0
2,392,529	-		BBR_RS20375	0.84	-3.0
2,392,534	-		BBR_RS20375	0.84	-0.1
2,392,536	+		BBR_RS20375	0.84	+0.9
2,392,541	+		BBR_RS20375	0.84	-0.4
2,392,544	-		BBR_RS20375	0.84	-1.2
2,392,544	-		BBR_RS20375	0.84	-2.3
2,392,554	-		BBR_RS20375	0.85	-0.1
2,392,554	-		BBR_RS20375	0.85	-1.8
2,392,571	+		BBR_RS20375	0.85	+0.8
2,392,584	+		BBR_RS20375	0.86	-1.2
2,392,587	-		BBR_RS20375	0.86	-1.2
2,392,587	-		BBR_RS20375	0.86	+0.3
2,392,607	+		BBR_RS20375	0.87	-0.3
2,392,620	+		BBR_RS20375	0.87	-1.0
2,392,628	+		BBR_RS20375	0.88	-0.6
2,392,628	+		BBR_RS20375	0.88	-1.3
2,392,628	+		BBR_RS20375	0.88	-1.6
2,392,628	+		BBR_RS20375	0.88	+0.5
2,392,628	+		BBR_RS20375	0.88	-0.1
2,392,633	+		BBR_RS20375	0.88	-0.2
2,392,633	+		BBR_RS20375	0.88	-0.5
2,392,633	+		BBR_RS20375	0.88	-3.4
2,392,633	+		BBR_RS20375	0.88	-2.1
2,392,633	+		BBR_RS20375	0.88	-1.9
2,392,636	-		BBR_RS20375	0.88	-0.7
2,392,636	-		BBR_RS20375	0.88	-0.3
2,392,636	-		BBR_RS20375	0.88	-1.2
2,392,636	-		BBR_RS20375	0.88	-2.1
2,392,636	-		BBR_RS20375	0.88	-3.2
2,392,636	-		BBR_RS20375	0.88	-2.2
2,392,636	-		BBR_RS20375	0.88	-0.1
2,392,636	-		BBR_RS20375	0.88	-1.3
2,392,636	-		BBR_RS20375	0.88	-2.1
2,392,636	-		BBR_RS20375	0.88	-1.3
2,392,636	-		BBR_RS20375	0.88	-0.2
2,392,636	-		BBR_RS20375	0.88	+1.6
2,392,641	-		BBR_RS20375	0.88	-2.0
2,392,641	-		BBR_RS20375	0.88	-2.5
2,392,641	-		BBR_RS20375	0.88	-1.3
2,392,641	-		BBR_RS20375	0.88	-1.0
2,392,646	-		BBR_RS20375	0.88	+0.2
2,392,646	-		BBR_RS20375	0.88	-1.8
2,392,646	-		BBR_RS20375	0.88	-1.7
2,392,646	-		BBR_RS20375	0.88	-1.7
2,392,651	-		BBR_RS20375	0.88	-2.5
2,392,653	+		BBR_RS20375	0.89	-1.3
2,392,656	-		BBR_RS20375	0.89	+0.1
2,392,657	+		BBR_RS20375	0.89	-1.2
2,392,657	+		BBR_RS20375	0.89	-1.2
2,392,665	-		BBR_RS20375	0.89	-2.5
2,392,679	+		BBR_RS20375	0.90	-0.4
2,392,680	-		BBR_RS20375	0.90	-1.5
2,392,680	-		BBR_RS20375	0.90	-0.8
2,392,680	-		BBR_RS20375	0.90	-0.8
2,392,682	-		BBR_RS20375	0.90	-1.5
2,392,685	+		BBR_RS20375	0.90	-1.5
2,392,693	-				-1.9
2,392,693	-				-1.7
2,392,693	-				+0.3
2,392,693	-				-3.7
2,392,693	-				-1.3
2,392,693	-				-2.4
2,392,693	-				-1.4
2,392,693	-				-2.4
2,392,693	-				-1.2
2,392,693	-				-0.9
2,392,732	-				-1.5
2,392,742	-				-1.0
2,392,743	+				+0.2
2,392,762	-				-2.4
2,392,775	-				-0.3
2,392,781	-				-0.4
2,392,786	-				-0.7
2,392,786	-				-2.9
2,392,824	+				+1.3
2,392,824	-				-3.6
2,392,834	+				+0.2
2,392,839	+				+0.2
2,392,853	+				-1.8
2,392,856	-				-0.3
2,392,856	-				+1.2
2,392,873	+				-1.6
2,392,882	-				-0.7
2,392,898	-				-1.7
2,392,898	-				-0.6
2,392,900	-				-2.0
2,392,916	+				-1.7
2,392,934	-				-2.1
2,392,934	-				-2.5
2,392,948	+				+1.6
2,392,948	+				-0.3
2,392,948	+				-0.7
2,392,948	+				+0.5
2,392,948	+				-0.4
2,392,948	+				+0.3
2,392,948	+				+0.8
2,392,948	+				+0.7
2,392,948	+				+0.5
2,392,948	+				+0.2
2,392,948	+				+0.3
2,392,948	+				+0.3
2,392,948	+				+0.7
2,392,948	+				-0.3
2,392,953	+				+1.4
2,392,956	-				-1.4
2,392,956	-				+1.1
2,392,956	-				+0.8
2,392,956	-				-0.3
2,392,956	-				+0.0
2,392,956	-				+0.2
2,392,956	-				-1.2
2,392,956	-				+1.3
2,392,956	-				+1.0
2,392,956	-				+0.2
2,392,956	-				+1.1
2,392,956	-				-0.3
2,392,956	-				+0.7
2,392,956	-				-0.3
2,392,956	-				-1.1
2,392,956	-				+1.8
2,392,959	-				+1.4
2,392,961	-				-1.8
2,392,963	+				-0.9
2,392,963	+				+0.7
2,392,963	+				-0.5
2,392,963	+				+1.1
2,392,964	-				-0.5
2,392,966	-				-2.5
2,392,966	-				+0.5
2,392,966	-				-0.2
2,392,966	-				-0.2
2,392,966	-				-0.1
2,392,971	-				+1.9
2,392,971	-				+2.2
2,392,972	-				-0.1
2,392,972	-				-0.7
2,392,976	+				+1.6
2,392,986	+				+0.7
2,392,986	+				+0.5
2,392,994	-				+0.4
2,393,021	+				+0.3
2,393,021	+				-0.5
2,393,021	+				-0.8
2,393,023	+				-1.3
2,393,023	+				+0.1
2,393,030	-				-0.9
2,393,030	-				-0.8
2,393,031	-				+1.7
2,393,031	-				+0.8
2,393,031	-				-0.3
2,393,031	-				+0.4
2,393,031	-				-1.0
2,393,031	-				+1.5
2,393,031	-				-0.4
2,393,031	-				-1.3
2,393,060	+				-1.6
2,393,075	+				-1.9
2,393,075	+				+0.9
2,393,084	+				-0.9
2,393,088	+				-1.6
2,393,088	+				-0.3
2,393,091	+				-0.7
2,393,091	+				-2.7
2,393,096	-				-0.4
2,393,096	-				+0.2
2,393,098	+				-1.8
2,393,105	-				+0.9
2,393,117	+				-0.6
2,393,123	+				-0.2
2,393,131	-				+0.1
2,393,131	-				-0.8
2,393,132	+				-0.4
2,393,148	-				+0.1
2,393,155	-				+2.1
2,393,176	+				-2.1
2,393,176	+				+0.6
2,393,184	-				+0.8
2,393,191	+				-0.8
2,393,216	+				+1.6
2,393,216	+				+0.3
2,393,219	+				-0.5
2,393,226	-				+0.3
2,393,243	-				-1.8
2,393,245	-				-0.5
2,393,245	-				+1.3
2,393,265	+				+1.5
2,393,271	-				+0.3
2,393,275	+				+1.4
2,393,283	-				+1.4
2,393,283	-				+0.3
2,393,289	-				+3.3
2,393,294	-				+0.7
2,393,294	-				+0.6
2,393,294	-				+0.5
2,393,301	+				+0.6
2,393,303	-		BBR_RS20380	0.10	+3.6
2,393,303	-		BBR_RS20380	0.10	+2.0
2,393,311	+		BBR_RS20380	0.11	+1.2
2,393,313	+		BBR_RS20380	0.12	-0.8
2,393,313	+		BBR_RS20380	0.12	+0.3
2,393,326	-		BBR_RS20380	0.14	-0.6
2,393,326	-		BBR_RS20380	0.14	+1.6
2,393,333	+		BBR_RS20380	0.15	-0.9
2,393,341	-		BBR_RS20380	0.16	-1.7
2,393,350	-		BBR_RS20380	0.17	-0.8
2,393,352	+		BBR_RS20380	0.18	-0.6
2,393,363	+		BBR_RS20380	0.19	-0.2
2,393,371	+		BBR_RS20380	0.20	+0.7
2,393,371	-		BBR_RS20380	0.20	-1.2
2,393,371	-		BBR_RS20380	0.20	-0.4
2,393,389	-		BBR_RS20380	0.23	-2.0
2,393,399	-		BBR_RS20380	0.25	-2.7
2,393,404	-		BBR_RS20380	0.25	-1.9
2,393,408	+		BBR_RS20380	0.26	+1.3
2,393,414	-		BBR_RS20380	0.27	-2.3
2,393,416	-		BBR_RS20380	0.27	-0.7
2,393,434	+		BBR_RS20380	0.30	+0.6
2,393,442	-		BBR_RS20380	0.31	-0.8
2,393,465	-		BBR_RS20380	0.35	+0.1
2,393,472	-		BBR_RS20380	0.36	+1.8
2,393,868	-				-0.2
2,393,889	-				+0.5
2,393,890	-				+0.8
2,393,926	-				-2.0
2,393,934	-				-1.4
2,393,959	-		BBR_RS20385	0.13	-0.5
2,393,974	+		BBR_RS20385	0.15	-0.2
2,393,982	-		BBR_RS20385	0.17	-0.1
2,393,982	-		BBR_RS20385	0.17	-0.5
2,393,984	-		BBR_RS20385	0.17	+1.2
2,393,991	+		BBR_RS20385	0.18	+2.6
2,393,995	+		BBR_RS20385	0.18	-0.8
2,393,995	+		BBR_RS20385	0.18	+0.1
2,393,998	-		BBR_RS20385	0.19	+1.4
2,394,001	+		BBR_RS20385	0.19	+0.6
2,394,003	-		BBR_RS20385	0.20	+1.1
2,394,008	-		BBR_RS20385	0.20	-1.1
2,394,042	-		BBR_RS20385	0.25	+0.5
2,394,060	+		BBR_RS20385	0.28	-0.1
2,394,074	+		BBR_RS20385	0.30	+1.7
2,394,074	+		BBR_RS20385	0.30	-0.2
2,394,076	-		BBR_RS20385	0.30	+1.0
2,394,096	+		BBR_RS20385	0.33	-0.8
2,394,098	+		BBR_RS20385	0.33	+0.3
2,394,104	-		BBR_RS20385	0.34	-1.7
2,394,118	+		BBR_RS20385	0.36	+0.4
2,394,126	-		BBR_RS20385	0.38	-1.4
2,394,131	-		BBR_RS20385	0.38	-0.4
2,394,144	+		BBR_RS20385	0.40	-2.4
2,394,151	+		BBR_RS20385	0.41	+1.2
2,394,151	+		BBR_RS20385	0.41	-0.7
2,394,151	+		BBR_RS20385	0.41	+0.9
2,394,151	+		BBR_RS20385	0.41	-0.1
2,394,199	+		BBR_RS20385	0.48	-0.5
2,394,206	+		BBR_RS20385	0.49	+0.8
2,394,250	+		BBR_RS20385	0.56	+0.7
2,394,250	+		BBR_RS20385	0.56	+1.4
2,394,252	-		BBR_RS20385	0.56	-2.3
2,394,313	+		BBR_RS20385	0.65	+2.3
2,394,321	-		BBR_RS20385	0.66	-2.7
2,394,322	+		BBR_RS20385	0.66	-0.7
2,394,322	+		BBR_RS20385	0.66	-0.8
2,394,322	+		BBR_RS20385	0.66	-0.8
2,394,322	+		BBR_RS20385	0.66	-0.1
2,394,323	+		BBR_RS20385	0.66	-0.2
2,394,323	+		BBR_RS20385	0.66	+0.1
2,394,323	+		BBR_RS20385	0.66	-0.0
2,394,323	+		BBR_RS20385	0.66	-2.4
2,394,323	+		BBR_RS20385	0.66	-0.1
2,394,323	+		BBR_RS20385	0.66	-2.5
2,394,323	+		BBR_RS20385	0.66	-1.2
2,394,323	+		BBR_RS20385	0.66	-0.9
2,394,323	+		BBR_RS20385	0.66	+1.9
2,394,323	+		BBR_RS20385	0.66	-0.1
2,394,323	+		BBR_RS20385	0.66	+0.2
2,394,323	+		BBR_RS20385	0.66	-1.2
2,394,323	+		BBR_RS20385	0.66	+1.1
2,394,323	+		BBR_RS20385	0.66	+2.2
2,394,323	+		BBR_RS20385	0.66	+0.5
2,394,323	+		BBR_RS20385	0.66	+2.5
2,394,330	-		BBR_RS20385	0.67	+0.8
2,394,330	-		BBR_RS20385	0.67	-0.2
2,394,331	-		BBR_RS20385	0.68	-0.7
2,394,331	-		BBR_RS20385	0.68	-0.0
2,394,331	-		BBR_RS20385	0.68	+0.8
2,394,331	-		BBR_RS20385	0.68	-1.7
2,394,331	-		BBR_RS20385	0.68	+0.1
2,394,331	-		BBR_RS20385	0.68	+0.3
2,394,331	-		BBR_RS20385	0.68	+0.3
2,394,331	-		BBR_RS20385	0.68	+0.1
2,394,331	-		BBR_RS20385	0.68	+0.5
2,394,331	-		BBR_RS20385	0.68	+0.2
2,394,331	-		BBR_RS20385	0.68	+1.1
2,394,331	-		BBR_RS20385	0.68	-0.5
2,394,331	-		BBR_RS20385	0.68	-1.9
2,394,333	+		BBR_RS20385	0.68	-1.5
2,394,335	+		BBR_RS20385	0.68	-1.2
2,394,338	+		BBR_RS20385	0.69	+0.2
2,394,338	+		BBR_RS20385	0.69	+1.6
2,394,341	-		BBR_RS20385	0.69	+0.2
2,394,341	-		BBR_RS20385	0.69	+0.9
2,394,341	-		BBR_RS20385	0.69	-1.5
2,394,343	+		BBR_RS20385	0.69	-0.2
2,394,353	-		BBR_RS20385	0.71	-1.8
2,394,353	-		BBR_RS20385	0.71	+0.4
2,394,353	-		BBR_RS20385	0.71	-0.2
2,394,360	+		BBR_RS20385	0.72	-0.1
2,394,360	+		BBR_RS20385	0.72	-0.4
2,394,360	+		BBR_RS20385	0.72	-0.7
2,394,367	+		BBR_RS20385	0.73	-0.6
2,394,367	+		BBR_RS20385	0.73	-0.7
2,394,367	+		BBR_RS20385	0.73	+1.7
2,394,367	+		BBR_RS20385	0.73	-0.4
2,394,368	-		BBR_RS20385	0.73	-0.1
2,394,372	+		BBR_RS20385	0.74	-0.0
2,394,373	+		BBR_RS20385	0.74	+0.0
2,394,380	-		BBR_RS20385	0.75	+0.3
2,394,402	+		BBR_RS20385	0.78	+0.7
2,394,402	+		BBR_RS20385	0.78	+0.9
2,394,402	+		BBR_RS20385	0.78	-0.3
2,394,402	+		BBR_RS20385	0.78	+0.6
2,394,405	-		BBR_RS20385	0.78	+0.9
2,394,405	-		BBR_RS20385	0.78	-0.7
2,394,410	-		BBR_RS20385	0.79	-0.8
2,394,410	-		BBR_RS20385	0.79	-0.7
2,394,412	+		BBR_RS20385	0.79	-0.5
2,394,420	-		BBR_RS20385	0.81	+0.4
2,394,420	-		BBR_RS20385	0.81	-0.4
2,394,420	-		BBR_RS20385	0.81	+0.6
2,394,420	-		BBR_RS20385	0.81	-0.6
2,394,429	+		BBR_RS20385	0.82	+1.7
2,394,429	+		BBR_RS20385	0.82	+0.5
2,394,429	+		BBR_RS20385	0.82	-1.9
2,394,429	+		BBR_RS20385	0.82	+2.2
2,394,436	-		BBR_RS20385	0.83	+1.3
2,394,436	-		BBR_RS20385	0.83	-1.2
2,394,451	-		BBR_RS20385	0.85	+0.7
2,394,451	-		BBR_RS20385	0.85	-2.2
2,394,451	-		BBR_RS20385	0.85	+0.8
2,394,468	-		BBR_RS20385	0.88	-2.0
2,394,476	+		BBR_RS20385	0.89	+0.2
2,394,508	-				+2.1
2,394,508	-				-1.7
2,394,508	-				-1.1
2,394,510	+				-1.6
2,394,510	+				+0.9
2,394,510	-				-0.5
2,394,513	+				-0.3
2,394,513	-				-0.0
2,394,545	+				+0.2
2,394,545	+				+1.9
2,394,549	+				-1.0
2,394,549	+				-0.4
2,394,549	+				-1.9
2,394,549	+				+0.5
2,394,552	-				-0.7
2,394,557	-				+0.9
2,394,557	-				+0.4
2,394,557	-				+0.5
2,394,557	-				+0.2
2,394,559	+				-1.7
2,394,559	+				+1.9
2,394,562	+				-1.2
2,394,562	+				-0.6
2,394,568	-				+0.3
2,394,639	+				-0.5
2,394,639	+				+1.1
2,394,642	+				+0.3
2,394,642	+				-1.0
2,394,645	-				-0.3
2,394,647	+				+0.4
2,394,647	-				-0.2
2,394,647	-				+0.7
2,394,647	-				-1.3
2,394,647	-				-0.9
2,394,649	+				+1.8
2,394,649	+				+1.6
2,394,649	+				-1.4
2,394,657	-				-0.0
2,394,657	-				+1.3
2,394,657	-				+0.8
2,394,657	-				-2.6
2,394,660	+				-0.2
2,394,675	+				+0.5
2,394,676	-				+1.5
2,394,683	-				-0.0
2,394,683	-				-2.1
2,394,685	+				+0.5
2,394,685	+				-0.0
2,394,685	+				+1.5
2,394,685	+				-2.2
2,394,688	-				+1.1
2,394,691	-				+0.4
2,394,693	-				+0.1
2,394,700	+				+1.6
2,394,700	-				-1.9
2,394,703	-				+1.6
2,394,703	-				-0.8
2,394,706	-				-1.0
2,394,706	-				-1.1
2,394,706	-				-0.3
2,394,708	-				-0.7
2,394,713	-				+0.6
2,394,713	-				-0.8
2,394,717	+				-0.3
2,394,723	-				-0.1
2,394,725	-				-1.1
2,394,725	-				-2.2
2,394,742	+				+0.2
2,394,742	+				+1.2
2,394,749	+				+0.5
2,394,750	-				+2.4
2,394,751	+				-0.9
2,394,753	-				-0.9
2,394,766	+				-0.8
2,394,767	-				+2.1
2,394,767	-				+0.0
2,394,776	-				-0.3
2,394,791	+				-2.0
2,394,799	-				+0.6
2,394,803	-		BBR_RS20390	0.10	-0.3
2,394,807	+		BBR_RS20390	0.11	+0.4
2,394,807	+		BBR_RS20390	0.11	+1.6
2,394,807	+		BBR_RS20390	0.11	+0.9
2,394,814	+		BBR_RS20390	0.12	+1.2
2,394,819	+		BBR_RS20390	0.13	-1.3
2,394,827	-		BBR_RS20390	0.14	-0.1
2,394,830	+		BBR_RS20390	0.15	-0.2
2,394,832	+		BBR_RS20390	0.15	+0.4
2,394,837	+		BBR_RS20390	0.16	+1.4
2,394,838	-		BBR_RS20390	0.16	+0.6
2,394,856	+		BBR_RS20390	0.19	-0.1
2,394,856	+		BBR_RS20390	0.19	+0.3
2,394,856	+		BBR_RS20390	0.19	-0.1
2,394,863	+		BBR_RS20390	0.21	+1.7
2,394,864	-		BBR_RS20390	0.21	+0.6
2,394,864	-		BBR_RS20390	0.21	+1.1
2,394,864	-		BBR_RS20390	0.21	-0.2
2,394,864	-		BBR_RS20390	0.21	+1.2
2,394,867	+		BBR_RS20390	0.21	-0.8
2,394,877	+		BBR_RS20390	0.23	-1.6
2,394,877	+		BBR_RS20390	0.23	+0.2
2,394,877	+		BBR_RS20390	0.23	-0.5
2,394,880	-		BBR_RS20390	0.24	+1.0
2,394,885	-		BBR_RS20390	0.25	+0.3
2,394,885	-		BBR_RS20390	0.25	-0.7
2,394,885	-		BBR_RS20390	0.25	+2.3
2,394,885	-		BBR_RS20390	0.25	-0.3
2,394,885	-		BBR_RS20390	0.25	+0.9