Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17805

Experiment: cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
1,774,077	-				-0.5
1,774,077	-				-0.9
1,774,077	-				+0.4
1,774,090	-				-0.1
1,774,096	-				-1.3
1,774,109	+				+0.4
1,774,158	-				-0.8
1,774,189	-				-0.2
1,774,206	-				+0.0
1,774,239	+				+0.6
1,774,239	+				+1.0
1,774,247	-				-0.2
1,774,256	+				+0.5
1,774,257	+				+1.1
1,774,265	-		BBR_RS17800	0.10	-0.2
1,774,282	+		BBR_RS17800	0.12	+0.2
1,774,282	+		BBR_RS17800	0.12	+2.7
1,774,297	-		BBR_RS17800	0.14	+0.5
1,774,315	-		BBR_RS17800	0.16	+0.6
1,774,383	-		BBR_RS17800	0.23	-0.8
1,774,393	-		BBR_RS17800	0.24	-1.4
1,774,444	-		BBR_RS17800	0.30	+0.2
1,774,449	-		BBR_RS17800	0.31	-1.6
1,774,449	-		BBR_RS17800	0.31	-0.1
1,774,450	-		BBR_RS17800	0.31	-3.0
1,774,476	+		BBR_RS17800	0.34	+0.0
1,774,476	+		BBR_RS17800	0.34	-0.5
1,774,481	+		BBR_RS17800	0.34	-0.3
1,774,489	-		BBR_RS17800	0.35	-2.0
1,774,489	-		BBR_RS17800	0.35	+0.5
1,774,509	+		BBR_RS17800	0.37	+0.9
1,774,509	+		BBR_RS17800	0.37	+0.2
1,774,530	+		BBR_RS17800	0.40	+0.9
1,774,538	-		BBR_RS17800	0.41	-0.3
1,774,540	+		BBR_RS17800	0.41	-1.4
1,774,644	+		BBR_RS17800	0.52	+2.7
1,774,644	+		BBR_RS17800	0.52	-1.8
1,774,644	+		BBR_RS17800	0.52	-0.3
1,774,644	+		BBR_RS17800	0.52	-1.3
1,774,644	+		BBR_RS17800	0.52	-0.7
1,774,644	+		BBR_RS17800	0.52	-0.4
1,774,644	+		BBR_RS17800	0.52	+0.2
1,774,644	+		BBR_RS17800	0.52	-0.2
1,774,646	+		BBR_RS17800	0.52	+0.3
1,774,646	+		BBR_RS17800	0.52	-1.1
1,774,646	+		BBR_RS17800	0.52	-0.6
1,774,652	-		BBR_RS17800	0.53	-0.8
1,774,652	-		BBR_RS17800	0.53	-0.9
1,774,652	-		BBR_RS17800	0.53	+0.2
1,774,683	+		BBR_RS17800	0.57	-0.9
1,774,693	+		BBR_RS17800	0.58	-0.6
1,774,754	+		BBR_RS17800	0.64	-1.0
1,774,759	+		BBR_RS17800	0.65	-1.6
1,774,760	-		BBR_RS17800	0.65	+0.4
1,774,762	-		BBR_RS17800	0.65	+1.3
1,774,762	-		BBR_RS17800	0.65	+1.0
1,774,767	-		BBR_RS17800	0.66	-1.0
1,774,767	-		BBR_RS17800	0.66	-1.0
1,774,767	-		BBR_RS17800	0.66	+0.7
1,774,796	-		BBR_RS17800	0.69	-2.9
1,774,838	+		BBR_RS17800	0.74	+1.1
1,774,910	+		BBR_RS17800	0.82	-1.5
1,774,913	-		BBR_RS17800	0.82	+0.1
1,774,918	-		BBR_RS17800	0.83	-0.4
1,774,918	-		BBR_RS17800	0.83	-1.2
1,774,918	-		BBR_RS17800	0.83	-0.8
1,774,933	-		BBR_RS17800	0.84	+1.4
1,774,986	+				-0.6
1,775,005	-				+1.3
1,775,020	+				+0.9
1,775,020	+				-1.0
1,775,020	+				+0.4
1,775,082	+				+0.1
1,775,092	+				+1.7
1,775,098	-				+0.3
1,775,102	+				-0.9
1,775,102	+				-0.1
1,775,110	-				-0.8
1,775,114	-				+1.9
1,775,168	-				+0.4
1,775,272	-		BBR_RS17805	0.16	-0.4
1,775,304	+		BBR_RS17805	0.19	+1.2
1,775,327	+		BBR_RS17805	0.21	+0.2
1,775,327	+		BBR_RS17805	0.21	-0.1
1,775,351	-		BBR_RS17805	0.23	-0.6
1,775,368	+		BBR_RS17805	0.24	+1.1
1,775,377	+		BBR_RS17805	0.25	+0.1
1,775,395	+		BBR_RS17805	0.27	+1.2
1,775,421	+		BBR_RS17805	0.29	-1.0
1,775,421	+		BBR_RS17805	0.29	+0.4
1,775,438	+		BBR_RS17805	0.30	+0.3
1,775,446	-		BBR_RS17805	0.31	+0.2
1,775,448	-		BBR_RS17805	0.31	-0.4
1,775,448	-		BBR_RS17805	0.31	-0.6
1,775,475	+		BBR_RS17805	0.33	-0.0
1,775,480	+		BBR_RS17805	0.34	-1.6
1,775,483	-		BBR_RS17805	0.34	+2.3
1,775,488	-		BBR_RS17805	0.34	-1.3
1,775,488	-		BBR_RS17805	0.34	-1.5
1,775,488	-		BBR_RS17805	0.34	+1.0
1,775,493	-		BBR_RS17805	0.35	-1.6
1,775,498	-		BBR_RS17805	0.35	+0.5
1,775,518	-		BBR_RS17805	0.37	-0.6
1,775,523	-		BBR_RS17805	0.37	+0.6
1,775,528	-		BBR_RS17805	0.38	+0.7
1,775,531	-		BBR_RS17805	0.38	+0.4
1,775,550	-		BBR_RS17805	0.39	+0.1
1,775,578	-		BBR_RS17805	0.42	+0.5
1,775,606	-		BBR_RS17805	0.44	+0.0
1,775,624	+		BBR_RS17805	0.46	-1.3
1,775,694	-		BBR_RS17805	0.51	-0.3
1,775,709	-		BBR_RS17805	0.53	+1.6
1,775,727	-		BBR_RS17805	0.54	+0.7
1,775,731	-		BBR_RS17805	0.54	+1.0
1,775,735	-		BBR_RS17805	0.55	-1.1
1,775,778	-		BBR_RS17805	0.58	-1.7
1,775,783	-		BBR_RS17805	0.59	-1.4
1,775,800	-		BBR_RS17805	0.60	-0.8
1,775,863	+		BBR_RS17805	0.65	-1.9
1,775,863	-		BBR_RS17805	0.65	+2.0
1,775,934	+		BBR_RS17805	0.71	-0.0
1,775,942	-		BBR_RS17805	0.72	-0.6
1,775,947	-		BBR_RS17805	0.72	-0.9
1,775,967	+		BBR_RS17805	0.74	-0.2
1,775,992	+		BBR_RS17805	0.76	-0.2
1,776,009	-		BBR_RS17805	0.78	+1.0
1,776,028	+		BBR_RS17805	0.79	+0.4
1,776,043	+		BBR_RS17805	0.80	-1.1
1,776,074	+		BBR_RS17805	0.83	+1.3
1,776,082	-		BBR_RS17805	0.84	+0.8
1,776,082	-		BBR_RS17805	0.84	-1.5
1,776,103	-		BBR_RS17805	0.85	+0.9
1,776,105	+		BBR_RS17805	0.85	+1.2
1,776,105	+		BBR_RS17805	0.85	-0.5
1,776,113	-		BBR_RS17805	0.86	+0.6
1,776,113	-		BBR_RS17805	0.86	-0.5
1,776,113	-		BBR_RS17805	0.86	-0.8
1,776,113	-		BBR_RS17805	0.86	+0.4
1,776,113	-		BBR_RS17805	0.86	+2.5
1,776,133	-		BBR_RS17805	0.88	+0.8
1,776,169	-				-1.2
1,776,169	-				-0.1
1,776,224	-				-0.0
1,776,259	-				-0.5
1,776,280	+				+1.1
1,776,280	+				+0.4
1,776,281	-				+0.5
1,776,281	-				+0.9
1,776,286	+				+0.0
1,776,304	-				+0.1
1,776,304	-				+0.8
1,776,361	+		BBR_RS17810	0.12	-0.4
1,776,369	-		BBR_RS17810	0.14	-0.2
1,776,426	-		BBR_RS17810	0.22	-1.3
1,776,443	+		BBR_RS17810	0.24	-2.7
1,776,463	-		BBR_RS17810	0.27	-0.9
1,776,463	-		BBR_RS17810	0.27	+2.2
1,776,465	+		BBR_RS17810	0.28	-0.4
1,776,476	-		BBR_RS17810	0.29	-1.7
1,776,492	-		BBR_RS17810	0.31	+1.1
1,776,492	-		BBR_RS17810	0.31	+1.3
1,776,502	+		BBR_RS17810	0.33	-0.0
1,776,576	-		BBR_RS17810	0.44	-1.9
1,776,583	-		BBR_RS17810	0.45	-0.2
1,776,583	-		BBR_RS17810	0.45	-0.7
1,776,699	-		BBR_RS17810	0.62	+0.2
1,776,729	+		BBR_RS17810	0.66	-0.7
1,776,743	-		BBR_RS17810	0.68	-0.1
1,776,747	-		BBR_RS17810	0.69	-1.6
1,776,749	+		BBR_RS17810	0.69	-0.8
1,776,773	+		BBR_RS17810	0.72	-0.7
1,776,814	-		BBR_RS17810	0.78	+0.2
1,776,912	-				-0.2
1,776,917	+				-0.3
1,776,923	-				+0.0
1,776,925	-				-0.1
1,776,972	-				+0.6
1,776,973	-				-1.7
1,777,079	-				-0.1
1,777,082	+				-0.6
1,777,169	-				+0.6
1,777,206	+		BBR_RS17815	0.12	-0.4
1,777,211	+		BBR_RS17815	0.13	+0.8
1,777,232	+		BBR_RS17815	0.15	+0.4
1,777,258	-		BBR_RS17815	0.17	+1.8
1,777,258	-		BBR_RS17815	0.17	+1.8
1,777,275	+		BBR_RS17815	0.19	+0.3