Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17795

Experiment: cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
1,771,691	+		BBR_RS21020	0.29	-0.8
1,771,698	-		BBR_RS21020	0.30	-0.1
1,771,727	+		BBR_RS21020	0.37	-0.6
1,771,738	+		BBR_RS21020	0.39	-0.1
1,771,751	+		BBR_RS21020	0.42	-0.0
1,771,759	-		BBR_RS21020	0.44	+0.0
1,771,759	-		BBR_RS21020	0.44	+1.1
1,771,829	+		BBR_RS21020	0.60	+0.7
1,771,872	-		BBR_RS21020	0.70	+1.7
1,771,882	+		BBR_RS21020	0.72	-0.9
1,771,909	-		BBR_RS21020	0.78	-1.4
1,772,001	-				+1.3
1,772,027	-				-3.0
1,772,063	-				+0.5
1,772,148	+				-0.4
1,772,149	+				+0.4
1,772,252	+				+0.4
1,772,310	+		BBR_RS17790	0.20	+0.1
1,772,318	-		BBR_RS17790	0.24	-0.0
1,772,318	-		BBR_RS17790	0.24	+0.1
1,772,351	-		BBR_RS17790	0.40	-0.0
1,772,351	-		BBR_RS17790	0.40	-0.5
1,772,407	+		BBR_RS17790	0.67	-1.0
1,772,495	-				-1.8
1,772,537	-				+0.8
1,772,537	-				-1.3
1,772,635	+				-2.0
1,772,635	+				+0.5
1,772,680	-				+0.3
1,772,686	-				-2.0
1,772,741	+				+1.5
1,772,795	+				+0.7
1,772,799	-				+0.5
1,772,801	+				+2.1
1,772,803	-				+1.5
1,772,810	-				+0.5
1,772,810	-				+1.5
1,772,813	+				-0.0
1,772,816	+				-1.0
1,772,859	+		BBR_RS17795	0.12	+1.7
1,772,859	+		BBR_RS17795	0.12	+0.8
1,772,859	+		BBR_RS17795	0.12	-0.5
1,772,898	+		BBR_RS17795	0.15	+2.9
1,772,904	+		BBR_RS17795	0.15	-0.5
1,772,912	-		BBR_RS17795	0.16	+0.8
1,772,967	+		BBR_RS17795	0.19	-0.7
1,772,992	+		BBR_RS17795	0.21	-0.6
1,773,036	+		BBR_RS17795	0.24	+2.2
1,773,041	+		BBR_RS17795	0.24	-1.4
1,773,044	-		BBR_RS17795	0.25	+1.1
1,773,044	-		BBR_RS17795	0.25	-1.3
1,773,044	-		BBR_RS17795	0.25	-0.6
1,773,079	-		BBR_RS17795	0.27	+0.7
1,773,087	-		BBR_RS17795	0.28	-2.0
1,773,140	+		BBR_RS17795	0.31	+0.2
1,773,166	-		BBR_RS17795	0.33	+0.7
1,773,196	+		BBR_RS17795	0.35	-0.2
1,773,196	-		BBR_RS17795	0.35	+0.6
1,773,197	+		BBR_RS17795	0.35	+1.6
1,773,204	-		BBR_RS17795	0.36	-0.6
1,773,205	+		BBR_RS17795	0.36	+0.7
1,773,213	-		BBR_RS17795	0.36	-0.6
1,773,213	-		BBR_RS17795	0.36	+1.3
1,773,213	-		BBR_RS17795	0.36	-0.7
1,773,213	-		BBR_RS17795	0.36	-2.6
1,773,213	-		BBR_RS17795	0.36	+0.2
1,773,229	+		BBR_RS17795	0.37	+0.7
1,773,229	+		BBR_RS17795	0.37	-0.9
1,773,229	+		BBR_RS17795	0.37	-1.6
1,773,237	-		BBR_RS17795	0.38	+0.3
1,773,243	-		BBR_RS17795	0.38	-0.3
1,773,270	-		BBR_RS17795	0.40	-0.3
1,773,270	-		BBR_RS17795	0.40	+0.2
1,773,270	-		BBR_RS17795	0.40	-0.7
1,773,275	+		BBR_RS17795	0.41	+0.2
1,773,295	+		BBR_RS17795	0.42	+0.3
1,773,322	-		BBR_RS17795	0.44	-1.7
1,773,350	-		BBR_RS17795	0.46	-1.2
1,773,365	-		BBR_RS17795	0.47	-0.3
1,773,369	-		BBR_RS17795	0.47	+0.8
1,773,380	+		BBR_RS17795	0.48	-0.1
1,773,380	+		BBR_RS17795	0.48	-1.2
1,773,387	+		BBR_RS17795	0.48	-1.7
1,773,388	-		BBR_RS17795	0.48	+2.4
1,773,395	-		BBR_RS17795	0.49	+0.2
1,773,395	-		BBR_RS17795	0.49	+0.2
1,773,408	+		BBR_RS17795	0.50	+0.4
1,773,416	-		BBR_RS17795	0.50	+0.9
1,773,416	-		BBR_RS17795	0.50	-1.3
1,773,469	+		BBR_RS17795	0.54	-0.1
1,773,477	-		BBR_RS17795	0.55	-1.4
1,773,477	-		BBR_RS17795	0.55	+0.1
1,773,477	-		BBR_RS17795	0.55	-0.4
1,773,477	-		BBR_RS17795	0.55	-0.9
1,773,477	-		BBR_RS17795	0.55	+0.7
1,773,506	-		BBR_RS17795	0.57	-0.7
1,773,506	-		BBR_RS17795	0.57	+1.7
1,773,506	-		BBR_RS17795	0.57	+1.8
1,773,516	+		BBR_RS17795	0.57	+1.5
1,773,529	-		BBR_RS17795	0.58	-0.7
1,773,530	-		BBR_RS17795	0.58	-0.2
1,773,537	+		BBR_RS17795	0.59	-0.2
1,773,565	-		BBR_RS17795	0.61	-1.3
1,773,567	+		BBR_RS17795	0.61	+0.7
1,773,592	+		BBR_RS17795	0.63	+1.6
1,773,625	-		BBR_RS17795	0.65	-2.4
1,773,646	-		BBR_RS17795	0.66	+0.3
1,773,646	-		BBR_RS17795	0.66	+0.7
1,773,655	+		BBR_RS17795	0.67	+0.7
1,773,665	-		BBR_RS17795	0.68	-1.7
1,773,717	-		BBR_RS17795	0.71	-0.5
1,773,743	-		BBR_RS17795	0.73	-1.0
1,773,753	-		BBR_RS17795	0.74	+0.4
1,773,781	+		BBR_RS17795	0.76	-0.7
1,773,928	-		BBR_RS17795	0.86	+0.5
1,773,933	+		BBR_RS17795	0.86	-0.9
1,773,933	+		BBR_RS17795	0.86	-1.3
1,773,941	-		BBR_RS17795	0.87	+2.1
1,773,941	-		BBR_RS17795	0.87	-1.2
1,773,941	-		BBR_RS17795	0.87	-0.4
1,773,941	-		BBR_RS17795	0.87	+0.8
1,773,951	-		BBR_RS17795	0.87	+1.2
1,773,991	+				+0.5
1,774,000	+				-0.0
1,774,010	+				-0.5
1,774,033	-				-1.1
1,774,038	+				-0.9
1,774,055	-				+0.6
1,774,069	-				+1.7
1,774,069	-				+0.7
1,774,077	-				-0.5
1,774,077	-				-0.9
1,774,077	-				+0.4
1,774,090	-				-0.1
1,774,096	-				-1.3
1,774,109	+				+0.4
1,774,158	-				-0.8
1,774,189	-				-0.2
1,774,206	-				+0.0
1,774,239	+				+0.6
1,774,239	+				+1.0
1,774,247	-				-0.2
1,774,256	+				+0.5
1,774,257	+				+1.1
1,774,265	-		BBR_RS17800	0.10	-0.2
1,774,282	+		BBR_RS17800	0.12	+0.2
1,774,282	+		BBR_RS17800	0.12	+2.7
1,774,297	-		BBR_RS17800	0.14	+0.5
1,774,315	-		BBR_RS17800	0.16	+0.6
1,774,383	-		BBR_RS17800	0.23	-0.8
1,774,393	-		BBR_RS17800	0.24	-1.4
1,774,444	-		BBR_RS17800	0.30	+0.2
1,774,449	-		BBR_RS17800	0.31	-1.6
1,774,449	-		BBR_RS17800	0.31	-0.1
1,774,450	-		BBR_RS17800	0.31	-3.0
1,774,476	+		BBR_RS17800	0.34	+0.0
1,774,476	+		BBR_RS17800	0.34	-0.5
1,774,481	+		BBR_RS17800	0.34	-0.3
1,774,489	-		BBR_RS17800	0.35	-2.0
1,774,489	-		BBR_RS17800	0.35	+0.5
1,774,509	+		BBR_RS17800	0.37	+0.9
1,774,509	+		BBR_RS17800	0.37	+0.2
1,774,530	+		BBR_RS17800	0.40	+0.9
1,774,538	-		BBR_RS17800	0.41	-0.3
1,774,540	+		BBR_RS17800	0.41	-1.4
1,774,644	+		BBR_RS17800	0.52	+2.7
1,774,644	+		BBR_RS17800	0.52	-1.8
1,774,644	+		BBR_RS17800	0.52	-0.3
1,774,644	+		BBR_RS17800	0.52	-1.3
1,774,644	+		BBR_RS17800	0.52	-0.7
1,774,644	+		BBR_RS17800	0.52	-0.4
1,774,644	+		BBR_RS17800	0.52	+0.2
1,774,644	+		BBR_RS17800	0.52	-0.2
1,774,646	+		BBR_RS17800	0.52	+0.3
1,774,646	+		BBR_RS17800	0.52	-1.1
1,774,646	+		BBR_RS17800	0.52	-0.6
1,774,652	-		BBR_RS17800	0.53	-0.8
1,774,652	-		BBR_RS17800	0.53	-0.9
1,774,652	-		BBR_RS17800	0.53	+0.2
1,774,683	+		BBR_RS17800	0.57	-0.9
1,774,693	+		BBR_RS17800	0.58	-0.6
1,774,754	+		BBR_RS17800	0.64	-1.0
1,774,759	+		BBR_RS17800	0.65	-1.6
1,774,760	-		BBR_RS17800	0.65	+0.4
1,774,762	-		BBR_RS17800	0.65	+1.3
1,774,762	-		BBR_RS17800	0.65	+1.0
1,774,767	-		BBR_RS17800	0.66	-1.0
1,774,767	-		BBR_RS17800	0.66	-1.0
1,774,767	-		BBR_RS17800	0.66	+0.7
1,774,796	-		BBR_RS17800	0.69	-2.9
1,774,838	+		BBR_RS17800	0.74	+1.1
1,774,910	+		BBR_RS17800	0.82	-1.5
1,774,913	-		BBR_RS17800	0.82	+0.1
1,774,918	-		BBR_RS17800	0.83	-0.4
1,774,918	-		BBR_RS17800	0.83	-1.2
1,774,918	-		BBR_RS17800	0.83	-0.8
1,774,933	-		BBR_RS17800	0.84	+1.4
1,774,986	+				-0.6
1,775,005	-				+1.3
1,775,020	+				+0.9
1,775,020	+				-1.0
1,775,020	+				+0.4
1,775,082	+				+0.1
1,775,092	+				+1.7
1,775,098	-				+0.3
1,775,102	+				-0.9
1,775,102	+				-0.1
1,775,110	-				-0.8
1,775,114	-				+1.9