Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15535

Experiment: cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS15530 and BBR_RS15535 are separated by 158 nucleotidesBBR_RS15535 and BBR_RS15540 are separated by 150 nucleotides BBR_RS15530: BBR_RS15530 - DNA-binding protein WhiA, at 1,258,273 to 1,259,223 _RS15530 BBR_RS15535: BBR_RS15535 - phosphoglycerate kinase, at 1,259,382 to 1,260,587 _RS15535 BBR_RS15540: BBR_RS15540 - triose-phosphate isomerase, at 1,260,738 to 1,261,541 _RS15540 Position (kb) 1259 1260 1261Strain fitness (log2 ratio) -1 0 1at 1259.300 kb on + strandat 1259.323 kb on - strandat 1259.324 kb on + strandat 1260.635 kb on + strandat 1260.700 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
remove
1,259,300 + -0.2
1,259,323 - +0.8
1,259,324 + -0.9
1,260,635 + -0.1
1,260,700 - -1.0

Or see this region's nucleotide sequence