Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13730

Experiment: cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13725 and BBR_RS13730 are separated by 70 nucleotidesBBR_RS13730 and BBR_RS13735 are separated by 167 nucleotides BBR_RS13725: BBR_RS13725 - ATP-dependent helicase, at 851,919 to 853,466 _RS13725 BBR_RS13730: BBR_RS13730 - hypothetical protein, at 853,537 to 855,267 _RS13730 BBR_RS13735: BBR_RS13735 - Lon protease, at 855,435 to 856,358 _RS13735 Position (kb) 853 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 853.450 kb on - strandat 853.533 kb on + strandat 853.570 kb on + strandat 853.577 kb on - strandat 853.577 kb on - strandat 853.577 kb on - strandat 853.596 kb on - strandat 853.658 kb on + strandat 853.666 kb on + strandat 853.666 kb on - strandat 853.739 kb on + strand, within BBR_RS13730at 853.750 kb on + strand, within BBR_RS13730at 853.750 kb on + strand, within BBR_RS13730at 853.798 kb on + strand, within BBR_RS13730at 853.827 kb on + strand, within BBR_RS13730at 853.855 kb on - strand, within BBR_RS13730at 853.861 kb on - strand, within BBR_RS13730at 853.866 kb on + strand, within BBR_RS13730at 853.934 kb on + strand, within BBR_RS13730at 854.002 kb on + strand, within BBR_RS13730at 854.010 kb on - strand, within BBR_RS13730at 854.010 kb on - strand, within BBR_RS13730at 854.047 kb on + strand, within BBR_RS13730at 854.050 kb on - strand, within BBR_RS13730at 854.052 kb on + strand, within BBR_RS13730at 854.055 kb on - strand, within BBR_RS13730at 854.060 kb on - strand, within BBR_RS13730at 854.060 kb on - strand, within BBR_RS13730at 854.228 kb on + strand, within BBR_RS13730at 854.228 kb on - strand, within BBR_RS13730at 854.228 kb on - strand, within BBR_RS13730at 854.239 kb on + strand, within BBR_RS13730at 854.246 kb on + strand, within BBR_RS13730at 854.275 kb on - strand, within BBR_RS13730at 854.356 kb on - strand, within BBR_RS13730at 854.383 kb on + strand, within BBR_RS13730at 854.447 kb on + strand, within BBR_RS13730at 854.447 kb on + strand, within BBR_RS13730at 854.470 kb on - strand, within BBR_RS13730at 854.532 kb on - strand, within BBR_RS13730at 854.532 kb on - strand, within BBR_RS13730at 854.532 kb on - strand, within BBR_RS13730at 854.564 kb on + strand, within BBR_RS13730at 854.569 kb on + strand, within BBR_RS13730at 854.572 kb on - strand, within BBR_RS13730at 854.572 kb on - strand, within BBR_RS13730at 854.589 kb on + strand, within BBR_RS13730at 854.615 kb on + strand, within BBR_RS13730at 854.847 kb on - strand, within BBR_RS13730at 854.914 kb on + strand, within BBR_RS13730at 854.956 kb on + strand, within BBR_RS13730at 854.959 kb on - strand, within BBR_RS13730at 854.965 kb on + strand, within BBR_RS13730at 854.984 kb on - strand, within BBR_RS13730at 854.995 kb on + strand, within BBR_RS13730at 854.995 kb on + strand, within BBR_RS13730at 855.042 kb on - strand, within BBR_RS13730at 855.043 kb on + strand, within BBR_RS13730at 855.045 kb on + strand, within BBR_RS13730at 855.051 kb on - strand, within BBR_RS13730at 855.051 kb on - strand, within BBR_RS13730at 855.051 kb on - strand, within BBR_RS13730at 855.068 kb on + strand, within BBR_RS13730at 855.079 kb on - strand, within BBR_RS13730at 855.109 kb on - strandat 855.125 kb on + strandat 855.147 kb on - strandat 855.148 kb on - strandat 855.152 kb on - strandat 855.181 kb on - strandat 855.267 kb on - strandat 855.270 kb on + strandat 855.298 kb on - strandat 855.302 kb on + strandat 855.373 kb on + strandat 855.381 kb on - strandat 855.381 kb on - strandat 855.381 kb on - strandat 855.392 kb on - strandat 855.529 kb on + strand, within BBR_RS13735

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Per-strain Table

Position Strand Gene LocusTag Fraction cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
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853,450 - -1.5
853,533 + -0.5
853,570 + -1.4
853,577 - +0.5
853,577 - -1.5
853,577 - +1.7
853,596 - -0.4
853,658 + -2.6
853,666 + -0.2
853,666 - -1.3
853,739 + BBR_RS13730 0.12 -2.3
853,750 + BBR_RS13730 0.12 -1.5
853,750 + BBR_RS13730 0.12 +1.4
853,798 + BBR_RS13730 0.15 -0.6
853,827 + BBR_RS13730 0.17 -0.7
853,855 - BBR_RS13730 0.18 -0.3
853,861 - BBR_RS13730 0.19 -0.7
853,866 + BBR_RS13730 0.19 +0.1
853,934 + BBR_RS13730 0.23 -2.4
854,002 + BBR_RS13730 0.27 -1.2
854,010 - BBR_RS13730 0.27 -1.2
854,010 - BBR_RS13730 0.27 -0.4
854,047 + BBR_RS13730 0.29 -0.9
854,050 - BBR_RS13730 0.30 -1.5
854,052 + BBR_RS13730 0.30 -1.5
854,055 - BBR_RS13730 0.30 +0.8
854,060 - BBR_RS13730 0.30 -1.8
854,060 - BBR_RS13730 0.30 +1.4
854,228 + BBR_RS13730 0.40 -0.2
854,228 - BBR_RS13730 0.40 -1.2
854,228 - BBR_RS13730 0.40 -0.4
854,239 + BBR_RS13730 0.41 -0.5
854,246 + BBR_RS13730 0.41 -0.9
854,275 - BBR_RS13730 0.43 -0.4
854,356 - BBR_RS13730 0.47 +0.6
854,383 + BBR_RS13730 0.49 -0.5
854,447 + BBR_RS13730 0.53 -2.0
854,447 + BBR_RS13730 0.53 -2.2
854,470 - BBR_RS13730 0.54 +0.7
854,532 - BBR_RS13730 0.57 -1.4
854,532 - BBR_RS13730 0.57 -1.5
854,532 - BBR_RS13730 0.57 -0.2
854,564 + BBR_RS13730 0.59 -1.2
854,569 + BBR_RS13730 0.60 -0.1
854,572 - BBR_RS13730 0.60 -3.1
854,572 - BBR_RS13730 0.60 +0.9
854,589 + BBR_RS13730 0.61 -0.2
854,615 + BBR_RS13730 0.62 -0.8
854,847 - BBR_RS13730 0.76 -1.5
854,914 + BBR_RS13730 0.80 -0.3
854,956 + BBR_RS13730 0.82 +0.7
854,959 - BBR_RS13730 0.82 +2.2
854,965 + BBR_RS13730 0.82 -0.5
854,984 - BBR_RS13730 0.84 -2.1
854,995 + BBR_RS13730 0.84 +0.0
854,995 + BBR_RS13730 0.84 -1.1
855,042 - BBR_RS13730 0.87 -2.2
855,043 + BBR_RS13730 0.87 -1.2
855,045 + BBR_RS13730 0.87 -0.2
855,051 - BBR_RS13730 0.87 -1.3
855,051 - BBR_RS13730 0.87 -1.5
855,051 - BBR_RS13730 0.87 -3.7
855,068 + BBR_RS13730 0.88 -0.7
855,079 - BBR_RS13730 0.89 +0.9
855,109 - +1.7
855,125 + -2.3
855,147 - -1.3
855,148 - +0.7
855,152 - -0.4
855,181 - -0.4
855,267 - -1.7
855,270 + -1.9
855,298 - -1.2
855,302 + +0.3
855,373 + -1.1
855,381 - -1.5
855,381 - -1.1
855,381 - +1.0
855,392 - +0.1
855,529 + BBR_RS13735 0.10 -2.5

Or see this region's nucleotide sequence