Strain Fitness in Sinorhizobium meliloti 1021 around SMc01849

Experiment: 6-Pentyl-2H-pyran-2-one 0.4177863333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01850 and SMc01849 are separated by 37 nucleotidesSMc01849 and SMc01848 are separated by 343 nucleotides SMc01850: SMc01850 - hypothetical protein, at 2,363,271 to 2,364,272 SMc01850 SMc01849: SMc01849 - hydrolase, at 2,364,310 to 2,365,671 SMc01849 SMc01848: SMc01848 - hypothetical protein, at 2,366,015 to 2,367,265 SMc01848 Position (kb) 2364 2365 2366Strain fitness (log2 ratio) -1 0 1at 2363.367 kb on - strandat 2363.440 kb on - strand, within SMc01850at 2363.672 kb on + strand, within SMc01850at 2363.952 kb on + strand, within SMc01850at 2363.953 kb on - strand, within SMc01850at 2364.066 kb on + strand, within SMc01850at 2364.091 kb on - strand, within SMc01850at 2364.091 kb on - strand, within SMc01850at 2364.222 kb on + strandat 2364.222 kb on + strandat 2364.222 kb on + strandat 2364.223 kb on - strandat 2364.225 kb on + strandat 2364.226 kb on - strandat 2364.226 kb on - strandat 2364.264 kb on - strandat 2364.264 kb on - strandat 2364.270 kb on + strandat 2364.270 kb on + strandat 2364.294 kb on - strandat 2364.294 kb on - strandat 2364.294 kb on - strandat 2364.356 kb on + strandat 2364.456 kb on + strand, within SMc01849at 2364.525 kb on - strand, within SMc01849at 2364.569 kb on + strand, within SMc01849at 2364.569 kb on + strand, within SMc01849at 2364.569 kb on + strand, within SMc01849at 2364.569 kb on + strand, within SMc01849at 2364.570 kb on - strand, within SMc01849at 2364.570 kb on - strand, within SMc01849at 2364.570 kb on - strand, within SMc01849at 2364.656 kb on + strand, within SMc01849at 2364.656 kb on + strand, within SMc01849at 2364.656 kb on + strand, within SMc01849at 2364.657 kb on - strand, within SMc01849at 2364.657 kb on - strand, within SMc01849at 2364.657 kb on - strand, within SMc01849at 2364.657 kb on - strand, within SMc01849at 2364.657 kb on - strand, within SMc01849at 2364.657 kb on - strand, within SMc01849at 2364.657 kb on - strand, within SMc01849at 2364.657 kb on - strand, within SMc01849at 2364.657 kb on - strand, within SMc01849at 2364.662 kb on + strand, within SMc01849at 2364.662 kb on + strand, within SMc01849at 2364.662 kb on + strand, within SMc01849at 2364.663 kb on - strand, within SMc01849at 2364.663 kb on - strand, within SMc01849at 2364.663 kb on - strand, within SMc01849at 2364.663 kb on - strand, within SMc01849at 2364.903 kb on + strand, within SMc01849at 2364.903 kb on + strand, within SMc01849at 2365.139 kb on + strand, within SMc01849at 2365.139 kb on + strand, within SMc01849at 2365.139 kb on + strand, within SMc01849at 2365.139 kb on + strand, within SMc01849at 2365.140 kb on - strand, within SMc01849at 2365.140 kb on - strand, within SMc01849at 2365.140 kb on - strand, within SMc01849at 2365.140 kb on - strand, within SMc01849at 2365.379 kb on + strand, within SMc01849at 2365.562 kb on + strandat 2365.629 kb on + strandat 2365.692 kb on + strandat 2365.692 kb on + strandat 2365.693 kb on - strandat 2365.693 kb on - strandat 2365.694 kb on + strandat 2365.731 kb on - strandat 2365.738 kb on + strandat 2365.738 kb on + strandat 2365.738 kb on + strandat 2365.738 kb on + strandat 2365.739 kb on - strandat 2365.979 kb on + strandat 2366.255 kb on + strand, within SMc01848at 2366.256 kb on - strand, within SMc01848at 2366.256 kb on - strand, within SMc01848at 2366.256 kb on - strand, within SMc01848at 2366.256 kb on - strand, within SMc01848at 2366.415 kb on - strand, within SMc01848at 2366.459 kb on + strand, within SMc01848at 2366.460 kb on - strand, within SMc01848at 2366.519 kb on + strand, within SMc01848at 2366.520 kb on - strand, within SMc01848

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4177863333 mM
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2,363,367 - +0.7
2,363,440 - SMc01850 0.17 +0.7
2,363,672 + SMc01850 0.40 +0.7
2,363,952 + SMc01850 0.68 -0.6
2,363,953 - SMc01850 0.68 +1.3
2,364,066 + SMc01850 0.79 +0.1
2,364,091 - SMc01850 0.82 -0.9
2,364,091 - SMc01850 0.82 -0.3
2,364,222 + -0.0
2,364,222 + -0.8
2,364,222 + -1.1
2,364,223 - +1.0
2,364,225 + -0.1
2,364,226 - -1.1
2,364,226 - +0.7
2,364,264 - -0.8
2,364,264 - -0.1
2,364,270 + +0.9
2,364,270 + -0.3
2,364,294 - +0.2
2,364,294 - -0.2
2,364,294 - +0.1
2,364,356 + +1.0
2,364,456 + SMc01849 0.11 +0.2
2,364,525 - SMc01849 0.16 +0.6
2,364,569 + SMc01849 0.19 +0.1
2,364,569 + SMc01849 0.19 -0.6
2,364,569 + SMc01849 0.19 +0.3
2,364,569 + SMc01849 0.19 +0.5
2,364,570 - SMc01849 0.19 -0.3
2,364,570 - SMc01849 0.19 +0.2
2,364,570 - SMc01849 0.19 +0.3
2,364,656 + SMc01849 0.25 +0.3
2,364,656 + SMc01849 0.25 +0.6
2,364,656 + SMc01849 0.25 +0.0
2,364,657 - SMc01849 0.25 +0.3
2,364,657 - SMc01849 0.25 -0.1
2,364,657 - SMc01849 0.25 -0.1
2,364,657 - SMc01849 0.25 -0.1
2,364,657 - SMc01849 0.25 +0.4
2,364,657 - SMc01849 0.25 +0.1
2,364,657 - SMc01849 0.25 -0.2
2,364,657 - SMc01849 0.25 -0.1
2,364,657 - SMc01849 0.25 +0.3
2,364,662 + SMc01849 0.26 -0.3
2,364,662 + SMc01849 0.26 -0.1
2,364,662 + SMc01849 0.26 -0.6
2,364,663 - SMc01849 0.26 -0.5
2,364,663 - SMc01849 0.26 -1.0
2,364,663 - SMc01849 0.26 -0.8
2,364,663 - SMc01849 0.26 +0.1
2,364,903 + SMc01849 0.44 +0.3
2,364,903 + SMc01849 0.44 -0.9
2,365,139 + SMc01849 0.61 +0.2
2,365,139 + SMc01849 0.61 +0.2
2,365,139 + SMc01849 0.61 -0.3
2,365,139 + SMc01849 0.61 +0.8
2,365,140 - SMc01849 0.61 +0.1
2,365,140 - SMc01849 0.61 +0.9
2,365,140 - SMc01849 0.61 +0.2
2,365,140 - SMc01849 0.61 +0.6
2,365,379 + SMc01849 0.78 -0.1
2,365,562 + -0.9
2,365,629 + -0.4
2,365,692 + -0.8
2,365,692 + +1.7
2,365,693 - +0.5
2,365,693 - -1.1
2,365,694 + +0.6
2,365,731 - +1.3
2,365,738 + +0.5
2,365,738 + +0.8
2,365,738 + +0.2
2,365,738 + +0.9
2,365,739 - -1.1
2,365,979 + +0.6
2,366,255 + SMc01848 0.19 -0.1
2,366,256 - SMc01848 0.19 +0.3
2,366,256 - SMc01848 0.19 -0.1
2,366,256 - SMc01848 0.19 -0.5
2,366,256 - SMc01848 0.19 +0.1
2,366,415 - SMc01848 0.32 -0.5
2,366,459 + SMc01848 0.35 -0.1
2,366,460 - SMc01848 0.36 -0.0
2,366,519 + SMc01848 0.40 -0.6
2,366,520 - SMc01848 0.40 +1.1

Or see this region's nucleotide sequence