Strain Fitness in Sinorhizobium meliloti 1021 around SMc01513

Experiment: 6-Pentyl-2H-pyran-2-one 0.4177863333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01515 and SMc01514 are separated by 40 nucleotidesSMc01514 and SMc01747 are separated by 229 nucleotidesSMc01747 and SMc01513 are separated by 4 nucleotidesSMc01513 and SMc01512 are separated by 57 nucleotides SMc01515: SMc01515 - hypothetical protein, at 2,614,694 to 2,615,620 SMc01515 SMc01514: SMc01514 - hypothetical protein, at 2,615,661 to 2,616,095 SMc01514 SMc01747: SMc01747 - hypothetical protein, at 2,616,325 to 2,616,465 SMc01747 SMc01513: SMc01513 - hemin transport protein, at 2,616,470 to 2,617,537 SMc01513 SMc01512: SMc01512 - hemin binding periplasmic transmembrane protein, at 2,617,595 to 2,618,545 SMc01512 Position (kb) 2616 2617 2618Strain fitness (log2 ratio) -1 0 1 2at 2616.058 kb on - strandat 2616.058 kb on - strandat 2616.088 kb on + strandat 2616.088 kb on + strandat 2616.152 kb on - strandat 2616.304 kb on - strandat 2616.418 kb on + strand, within SMc01747at 2616.419 kb on - strandat 2616.463 kb on + strandat 2616.463 kb on + strandat 2616.519 kb on - strandat 2616.519 kb on - strandat 2616.725 kb on + strand, within SMc01513at 2616.932 kb on + strand, within SMc01513at 2616.938 kb on - strand, within SMc01513at 2616.938 kb on - strand, within SMc01513at 2616.938 kb on - strand, within SMc01513at 2616.938 kb on - strand, within SMc01513at 2617.793 kb on + strand, within SMc01512at 2617.793 kb on + strandat 2617.793 kb on + strand, within SMc01512at 2617.793 kb on + strand, within SMc01512at 2617.793 kb on + strand, within SMc01512at 2617.880 kb on + strand, within SMc01512at 2617.880 kb on + strand, within SMc01512at 2618.018 kb on + strand, within SMc01512at 2618.018 kb on + strand, within SMc01512at 2618.018 kb on + strand, within SMc01512at 2618.018 kb on + strand, within SMc01512at 2618.019 kb on - strand, within SMc01512at 2618.239 kb on + strand, within SMc01512at 2618.288 kb on + strand, within SMc01512at 2618.516 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4177863333 mM
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2,616,058 - +1.0
2,616,058 - -1.0
2,616,088 + -0.2
2,616,088 + +0.0
2,616,152 - +0.7
2,616,304 - +0.1
2,616,418 + SMc01747 0.66 -1.0
2,616,419 - +0.7
2,616,463 + -0.0
2,616,463 + +0.1
2,616,519 - +2.0
2,616,519 - -0.1
2,616,725 + SMc01513 0.24 -0.3
2,616,932 + SMc01513 0.43 -0.6
2,616,938 - SMc01513 0.44 -1.3
2,616,938 - SMc01513 0.44 -0.3
2,616,938 - SMc01513 0.44 -0.1
2,616,938 - SMc01513 0.44 -0.4
2,617,793 + SMc01512 0.21 +0.0
2,617,793 + -0.1
2,617,793 + SMc01512 0.21 +1.4
2,617,793 + SMc01512 0.21 -0.2
2,617,793 + SMc01512 0.21 +0.1
2,617,880 + SMc01512 0.30 +1.1
2,617,880 + SMc01512 0.30 -1.1
2,618,018 + SMc01512 0.44 +0.5
2,618,018 + SMc01512 0.44 -0.3
2,618,018 + SMc01512 0.44 +0.5
2,618,018 + SMc01512 0.44 +0.5
2,618,019 - SMc01512 0.45 -0.2
2,618,239 + SMc01512 0.68 +0.1
2,618,288 + SMc01512 0.73 +0.1
2,618,516 + +0.0

Or see this region's nucleotide sequence