Strain Fitness in Sinorhizobium meliloti 1021 around SMa1702

Experiment: 6-Pentyl-2H-pyran-2-one 0.4177863333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1698 and SMa1700 are separated by 576 nucleotidesSMa1700 and SMa1702 are separated by 146 nucleotidesSMa1702 and SMa1704 are separated by 583 nucleotides SMa1698: SMa1698 - syrB1 regulator, at 957,928 to 958,383 SMa1698 SMa1700: SMa1700 - hypothetical protein, at 958,960 to 959,169 SMa1700 SMa1702: SMa1702 - hypothetical protein, at 959,316 to 959,909 SMa1702 SMa1704: SMa1704 - hypothetical protein, at 960,493 to 961,722 SMa1704 Position (kb) 959 960Strain fitness (log2 ratio) -1 0 1at 958.365 kb on + strandat 958.368 kb on + strandat 958.400 kb on + strandat 958.401 kb on - strandat 958.556 kb on - strandat 958.583 kb on + strandat 958.583 kb on + strandat 958.583 kb on + strandat 958.680 kb on - strandat 958.695 kb on - strandat 958.697 kb on - strandat 958.719 kb on + strandat 958.720 kb on - strandat 958.795 kb on + strandat 958.795 kb on + strandat 958.796 kb on - strandat 958.796 kb on - strandat 958.876 kb on - strandat 959.113 kb on + strand, within SMa1700at 959.114 kb on - strand, within SMa1700at 959.205 kb on - strandat 959.299 kb on + strandat 959.299 kb on + strandat 959.299 kb on + strandat 959.473 kb on + strand, within SMa1702at 959.474 kb on - strand, within SMa1702at 959.673 kb on + strand, within SMa1702at 959.674 kb on - strand, within SMa1702at 959.801 kb on + strand, within SMa1702at 959.802 kb on - strand, within SMa1702at 960.003 kb on - strandat 960.068 kb on - strandat 960.068 kb on - strandat 960.070 kb on + strandat 960.071 kb on - strandat 960.157 kb on - strandat 960.385 kb on + strandat 960.386 kb on - strandat 960.457 kb on + strandat 960.457 kb on + strandat 960.457 kb on + strandat 960.458 kb on - strandat 960.557 kb on - strandat 960.558 kb on + strandat 960.558 kb on + strandat 960.559 kb on - strandat 960.559 kb on - strandat 960.740 kb on + strand, within SMa1704at 960.828 kb on - strand, within SMa1704at 960.828 kb on - strand, within SMa1704at 960.828 kb on - strand, within SMa1704

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4177863333 mM
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958,365 + +0.2
958,368 + -0.1
958,400 + +0.6
958,401 - -1.4
958,556 - -0.0
958,583 + +0.4
958,583 + -0.0
958,583 + -0.2
958,680 - +0.5
958,695 - -0.2
958,697 - +0.6
958,719 + -0.1
958,720 - -0.5
958,795 + +0.7
958,795 + -0.4
958,796 - +0.2
958,796 - +0.1
958,876 - +0.1
959,113 + SMa1700 0.73 +0.7
959,114 - SMa1700 0.73 +1.0
959,205 - +0.2
959,299 + -0.3
959,299 + +0.1
959,299 + -0.8
959,473 + SMa1702 0.26 -0.9
959,474 - SMa1702 0.27 -1.1
959,673 + SMa1702 0.60 -0.4
959,674 - SMa1702 0.60 -0.5
959,801 + SMa1702 0.82 -0.3
959,802 - SMa1702 0.82 -0.3
960,003 - +0.6
960,068 - +0.7
960,068 - +0.1
960,070 + +0.4
960,071 - -0.4
960,157 - +0.4
960,385 + +0.1
960,386 - +0.0
960,457 + +1.0
960,457 + +0.5
960,457 + +0.3
960,458 - +0.2
960,557 - -1.4
960,558 + -0.9
960,558 + +0.6
960,559 - -0.2
960,559 - -0.3
960,740 + SMa1704 0.20 -1.2
960,828 - SMa1704 0.27 -1.3
960,828 - SMa1704 0.27 +0.4
960,828 - SMa1704 0.27 +0.3

Or see this region's nucleotide sequence