Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21464

Experiment: 6-Pentyl-2H-pyran-2-one 0.4177863333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21463 and SM_b21464 are separated by 213 nucleotidesSM_b21464 and SM_b21465 are separated by 100 nucleotides SM_b21463: SM_b21463 - glycosyl hydrolase, 6-phospho-beta-glucosidase, at 1,389,575 to 1,390,960 _b21463 SM_b21464: SM_b21464 - GntR family transcriptional regulator, at 1,391,174 to 1,391,947 _b21464 SM_b21465: SM_b21465 - HlyD family protein secretion protein, at 1,392,048 to 1,393,367 _b21465 Position (kb) 1391 1392Strain fitness (log2 ratio) -2 -1 0 1at 1390.215 kb on + strand, within SM_b21463at 1390.218 kb on + strand, within SM_b21463at 1390.218 kb on + strand, within SM_b21463at 1390.219 kb on - strand, within SM_b21463at 1390.221 kb on + strand, within SM_b21463at 1390.221 kb on + strand, within SM_b21463at 1390.221 kb on + strand, within SM_b21463at 1390.221 kb on + strand, within SM_b21463at 1390.222 kb on - strand, within SM_b21463at 1390.224 kb on + strand, within SM_b21463at 1390.224 kb on + strand, within SM_b21463at 1390.224 kb on + strand, within SM_b21463at 1390.224 kb on + strand, within SM_b21463at 1390.225 kb on - strand, within SM_b21463at 1390.225 kb on - strand, within SM_b21463at 1390.227 kb on + strand, within SM_b21463at 1390.228 kb on - strand, within SM_b21463at 1390.228 kb on - strand, within SM_b21463at 1390.234 kb on - strand, within SM_b21463at 1390.234 kb on - strand, within SM_b21463at 1390.366 kb on + strand, within SM_b21463at 1390.367 kb on - strand, within SM_b21463at 1390.389 kb on + strand, within SM_b21463at 1390.390 kb on - strand, within SM_b21463at 1390.489 kb on - strand, within SM_b21463at 1390.584 kb on + strand, within SM_b21463at 1390.690 kb on + strand, within SM_b21463at 1390.691 kb on - strand, within SM_b21463at 1390.732 kb on - strand, within SM_b21463at 1390.817 kb on + strand, within SM_b21463at 1390.817 kb on + strand, within SM_b21463at 1390.817 kb on + strand, within SM_b21463at 1390.818 kb on - strand, within SM_b21463at 1390.818 kb on - strand, within SM_b21463at 1390.819 kb on + strand, within SM_b21463at 1390.819 kb on + strand, within SM_b21463at 1390.965 kb on + strandat 1391.237 kb on + strandat 1391.299 kb on + strand, within SM_b21464at 1391.300 kb on - strand, within SM_b21464at 1391.333 kb on + strand, within SM_b21464at 1391.420 kb on + strand, within SM_b21464at 1391.421 kb on - strand, within SM_b21464at 1391.421 kb on - strand, within SM_b21464at 1391.470 kb on + strand, within SM_b21464at 1391.622 kb on + strand, within SM_b21464at 1391.712 kb on - strand, within SM_b21464at 1391.733 kb on - strand, within SM_b21464at 1391.778 kb on + strand, within SM_b21464at 1391.779 kb on - strand, within SM_b21464at 1391.945 kb on + strandat 1391.945 kb on + strandat 1391.967 kb on + strandat 1391.992 kb on + strandat 1391.993 kb on - strandat 1391.993 kb on - strandat 1391.993 kb on - strandat 1392.027 kb on - strandat 1392.027 kb on - strandat 1392.029 kb on + strandat 1392.157 kb on + strandat 1392.220 kb on + strand, within SM_b21465at 1392.220 kb on + strand, within SM_b21465at 1392.220 kb on + strand, within SM_b21465at 1392.221 kb on - strand, within SM_b21465at 1392.370 kb on - strand, within SM_b21465at 1392.370 kb on - strand, within SM_b21465at 1392.452 kb on + strand, within SM_b21465at 1392.452 kb on + strand, within SM_b21465at 1392.545 kb on - strand, within SM_b21465at 1392.545 kb on - strand, within SM_b21465at 1392.822 kb on + strand, within SM_b21465at 1392.823 kb on - strand, within SM_b21465at 1392.823 kb on - strand, within SM_b21465at 1392.933 kb on + strand, within SM_b21465

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4177863333 mM
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1,390,215 + SM_b21463 0.46 +0.6
1,390,218 + SM_b21463 0.46 -0.2
1,390,218 + SM_b21463 0.46 -0.3
1,390,219 - SM_b21463 0.46 +0.1
1,390,221 + SM_b21463 0.47 -1.4
1,390,221 + SM_b21463 0.47 +0.6
1,390,221 + SM_b21463 0.47 -0.1
1,390,221 + SM_b21463 0.47 +0.3
1,390,222 - SM_b21463 0.47 -0.7
1,390,224 + SM_b21463 0.47 +0.1
1,390,224 + SM_b21463 0.47 -0.4
1,390,224 + SM_b21463 0.47 -0.5
1,390,224 + SM_b21463 0.47 -0.6
1,390,225 - SM_b21463 0.47 -0.6
1,390,225 - SM_b21463 0.47 -1.5
1,390,227 + SM_b21463 0.47 +0.0
1,390,228 - SM_b21463 0.47 -0.1
1,390,228 - SM_b21463 0.47 +0.6
1,390,234 - SM_b21463 0.48 -0.5
1,390,234 - SM_b21463 0.48 +0.9
1,390,366 + SM_b21463 0.57 -0.1
1,390,367 - SM_b21463 0.57 -0.0
1,390,389 + SM_b21463 0.59 -0.8
1,390,390 - SM_b21463 0.59 +0.4
1,390,489 - SM_b21463 0.66 +0.1
1,390,584 + SM_b21463 0.73 +0.4
1,390,690 + SM_b21463 0.80 +0.3
1,390,691 - SM_b21463 0.81 +0.4
1,390,732 - SM_b21463 0.83 -2.4
1,390,817 + SM_b21463 0.90 -0.5
1,390,817 + SM_b21463 0.90 +0.4
1,390,817 + SM_b21463 0.90 -0.4
1,390,818 - SM_b21463 0.90 +1.6
1,390,818 - SM_b21463 0.90 +0.0
1,390,819 + SM_b21463 0.90 -0.4
1,390,819 + SM_b21463 0.90 +0.5
1,390,965 + -0.3
1,391,237 + -0.3
1,391,299 + SM_b21464 0.16 +0.4
1,391,300 - SM_b21464 0.16 -0.1
1,391,333 + SM_b21464 0.21 -0.4
1,391,420 + SM_b21464 0.32 +0.2
1,391,421 - SM_b21464 0.32 +0.5
1,391,421 - SM_b21464 0.32 -0.1
1,391,470 + SM_b21464 0.38 +0.5
1,391,622 + SM_b21464 0.58 +0.6
1,391,712 - SM_b21464 0.70 +1.2
1,391,733 - SM_b21464 0.72 -0.4
1,391,778 + SM_b21464 0.78 +0.1
1,391,779 - SM_b21464 0.78 +0.5
1,391,945 + +0.9
1,391,945 + -0.8
1,391,967 + -0.1
1,391,992 + -0.8
1,391,993 - +0.2
1,391,993 - +0.1
1,391,993 - -0.0
1,392,027 - -0.5
1,392,027 - -0.4
1,392,029 + -0.0
1,392,157 + +0.3
1,392,220 + SM_b21465 0.13 -0.3
1,392,220 + SM_b21465 0.13 +0.1
1,392,220 + SM_b21465 0.13 +0.4
1,392,221 - SM_b21465 0.13 +0.1
1,392,370 - SM_b21465 0.24 -0.7
1,392,370 - SM_b21465 0.24 -0.1
1,392,452 + SM_b21465 0.31 +0.1
1,392,452 + SM_b21465 0.31 -0.3
1,392,545 - SM_b21465 0.38 +1.2
1,392,545 - SM_b21465 0.38 -1.2
1,392,822 + SM_b21465 0.59 +0.3
1,392,823 - SM_b21465 0.59 -0.6
1,392,823 - SM_b21465 0.59 -0.7
1,392,933 + SM_b21465 0.67 +0.2

Or see this region's nucleotide sequence