Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04016 and SMc04017 are separated by 310 nucleotides SMc04017 and SMc04018 are separated by 305 nucleotides
SMc04016: SMc04016 - homospermidine synthase, at 3,012,431 to 3,013,882
SMc04016
SMc04017: SMc04017 - outer membrane lipoprotein, at 3,014,193 to 3,014,561
SMc04017
SMc04018: SMc04018 - 5'-nucleotidase, at 3,014,867 to 3,016,753
SMc04018
Position (kb)
3014
3015 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3013.254 kb on - strand, within SMc04016 at 3013.316 kb on + strand, within SMc04016 at 3013.317 kb on - strand, within SMc04016 at 3013.415 kb on + strand, within SMc04016 at 3013.415 kb on + strand, within SMc04016 at 3013.415 kb on + strand, within SMc04016 at 3013.421 kb on + strand, within SMc04016 at 3013.422 kb on - strand, within SMc04016 at 3013.422 kb on - strand, within SMc04016 at 3013.521 kb on + strand, within SMc04016 at 3013.553 kb on + strand, within SMc04016 at 3013.574 kb on + strand, within SMc04016 at 3013.580 kb on + strand, within SMc04016 at 3013.731 kb on - strand, within SMc04016 at 3013.761 kb on - strand at 3013.761 kb on - strand at 3013.761 kb on - strand at 3013.784 kb on + strand at 3013.784 kb on + strand at 3013.785 kb on - strand at 3014.646 kb on - strand at 3014.737 kb on + strand at 3014.738 kb on - strand at 3014.743 kb on + strand at 3014.744 kb on - strand at 3014.813 kb on + strand at 3014.830 kb on + strand at 3015.078 kb on + strand, within SMc04018 at 3015.079 kb on - strand, within SMc04018 at 3015.079 kb on - strand at 3015.167 kb on + strand, within SMc04018 at 3015.167 kb on + strand, within SMc04018 at 3015.167 kb on + strand, within SMc04018 at 3015.168 kb on - strand, within SMc04018 at 3015.168 kb on - strand, within SMc04018 at 3015.168 kb on - strand, within SMc04018
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM remove 3,013,254 - SMc04016 0.57 -1.2 3,013,316 + SMc04016 0.61 -2.9 3,013,317 - SMc04016 0.61 +0.9 3,013,415 + SMc04016 0.68 +0.3 3,013,415 + SMc04016 0.68 -0.3 3,013,415 + SMc04016 0.68 +2.5 3,013,421 + SMc04016 0.68 +0.3 3,013,422 - SMc04016 0.68 -0.2 3,013,422 - SMc04016 0.68 -1.5 3,013,521 + SMc04016 0.75 -0.9 3,013,553 + SMc04016 0.77 -0.9 3,013,574 + SMc04016 0.79 -0.7 3,013,580 + SMc04016 0.79 -0.1 3,013,731 - SMc04016 0.90 -1.2 3,013,761 - -0.3 3,013,761 - +0.9 3,013,761 - +0.2 3,013,784 + +1.4 3,013,784 + -0.6 3,013,785 - -0.1 3,014,646 - +0.0 3,014,737 + +0.8 3,014,738 - +0.4 3,014,743 + +0.2 3,014,744 - +0.9 3,014,813 + +0.1 3,014,830 + +0.5 3,015,078 + SMc04018 0.11 -0.1 3,015,079 - SMc04018 0.11 -0.2 3,015,079 - +0.3 3,015,167 + SMc04018 0.16 +0.2 3,015,167 + SMc04018 0.16 -0.3 3,015,167 + SMc04018 0.16 -0.1 3,015,168 - SMc04018 0.16 -0.1 3,015,168 - SMc04018 0.16 +0.5 3,015,168 - SMc04018 0.16 +0.9
Or see this region's nucleotide sequence