Strain Fitness in Sinorhizobium meliloti 1021 around SMc04017

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04016 and SMc04017 are separated by 310 nucleotidesSMc04017 and SMc04018 are separated by 305 nucleotides SMc04016: SMc04016 - homospermidine synthase, at 3,012,431 to 3,013,882 SMc04016 SMc04017: SMc04017 - outer membrane lipoprotein, at 3,014,193 to 3,014,561 SMc04017 SMc04018: SMc04018 - 5'-nucleotidase, at 3,014,867 to 3,016,753 SMc04018 Position (kb) 3014 3015Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3013.254 kb on - strand, within SMc04016at 3013.316 kb on + strand, within SMc04016at 3013.317 kb on - strand, within SMc04016at 3013.415 kb on + strand, within SMc04016at 3013.415 kb on + strand, within SMc04016at 3013.415 kb on + strand, within SMc04016at 3013.421 kb on + strand, within SMc04016at 3013.422 kb on - strand, within SMc04016at 3013.422 kb on - strand, within SMc04016at 3013.521 kb on + strand, within SMc04016at 3013.553 kb on + strand, within SMc04016at 3013.574 kb on + strand, within SMc04016at 3013.580 kb on + strand, within SMc04016at 3013.731 kb on - strand, within SMc04016at 3013.761 kb on - strandat 3013.761 kb on - strandat 3013.761 kb on - strandat 3013.784 kb on + strandat 3013.784 kb on + strandat 3013.785 kb on - strandat 3014.646 kb on - strandat 3014.737 kb on + strandat 3014.738 kb on - strandat 3014.743 kb on + strandat 3014.744 kb on - strandat 3014.813 kb on + strandat 3014.830 kb on + strandat 3015.078 kb on + strand, within SMc04018at 3015.079 kb on - strand, within SMc04018at 3015.079 kb on - strandat 3015.167 kb on + strand, within SMc04018at 3015.167 kb on + strand, within SMc04018at 3015.167 kb on + strand, within SMc04018at 3015.168 kb on - strand, within SMc04018at 3015.168 kb on - strand, within SMc04018at 3015.168 kb on - strand, within SMc04018

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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3,013,254 - SMc04016 0.57 -1.2
3,013,316 + SMc04016 0.61 -2.9
3,013,317 - SMc04016 0.61 +0.9
3,013,415 + SMc04016 0.68 +0.3
3,013,415 + SMc04016 0.68 -0.3
3,013,415 + SMc04016 0.68 +2.5
3,013,421 + SMc04016 0.68 +0.3
3,013,422 - SMc04016 0.68 -0.2
3,013,422 - SMc04016 0.68 -1.5
3,013,521 + SMc04016 0.75 -0.9
3,013,553 + SMc04016 0.77 -0.9
3,013,574 + SMc04016 0.79 -0.7
3,013,580 + SMc04016 0.79 -0.1
3,013,731 - SMc04016 0.90 -1.2
3,013,761 - -0.3
3,013,761 - +0.9
3,013,761 - +0.2
3,013,784 + +1.4
3,013,784 + -0.6
3,013,785 - -0.1
3,014,646 - +0.0
3,014,737 + +0.8
3,014,738 - +0.4
3,014,743 + +0.2
3,014,744 - +0.9
3,014,813 + +0.1
3,014,830 + +0.5
3,015,078 + SMc04018 0.11 -0.1
3,015,079 - SMc04018 0.11 -0.2
3,015,079 - +0.3
3,015,167 + SMc04018 0.16 +0.2
3,015,167 + SMc04018 0.16 -0.3
3,015,167 + SMc04018 0.16 -0.1
3,015,168 - SMc04018 0.16 -0.1
3,015,168 - SMc04018 0.16 +0.5
3,015,168 - SMc04018 0.16 +0.9

Or see this region's nucleotide sequence