Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21265

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21264 and SM_b21265 are separated by 6 nucleotidesSM_b21265 and SM_b21266 overlap by 4 nucleotides SM_b21264: SM_b21264 - hypothetical protein, at 837,144 to 838,358 _b21264 SM_b21265: SM_b21265 - glycosyltransferase, at 838,365 to 839,612 _b21265 SM_b21266: SM_b21266 - hypothetical protein, at 839,609 to 840,796 _b21266 Position (kb) 838 839 840Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 837.369 kb on + strand, within SM_b21264at 837.369 kb on + strand, within SM_b21264at 837.369 kb on + strand, within SM_b21264at 837.370 kb on - strand, within SM_b21264at 837.370 kb on - strand, within SM_b21264at 837.371 kb on + strand, within SM_b21264at 837.371 kb on + strand, within SM_b21264at 837.372 kb on - strand, within SM_b21264at 837.513 kb on - strand, within SM_b21264at 837.513 kb on - strand, within SM_b21264at 837.522 kb on + strand, within SM_b21264at 837.640 kb on - strand, within SM_b21264at 837.675 kb on + strand, within SM_b21264at 837.676 kb on - strand, within SM_b21264at 837.780 kb on - strand, within SM_b21264at 837.795 kb on + strand, within SM_b21264at 837.795 kb on + strand, within SM_b21264at 837.795 kb on + strand, within SM_b21264at 837.799 kb on + strand, within SM_b21264at 837.799 kb on + strand, within SM_b21264at 837.799 kb on + strand, within SM_b21264at 837.862 kb on - strand, within SM_b21264at 837.887 kb on + strand, within SM_b21264at 837.887 kb on + strand, within SM_b21264at 837.912 kb on + strand, within SM_b21264at 837.913 kb on - strand, within SM_b21264at 837.976 kb on + strand, within SM_b21264at 837.976 kb on + strand, within SM_b21264at 837.977 kb on - strand, within SM_b21264at 838.054 kb on - strand, within SM_b21264at 838.121 kb on - strand, within SM_b21264at 838.286 kb on - strandat 838.316 kb on + strandat 838.317 kb on - strandat 838.548 kb on + strand, within SM_b21265at 838.548 kb on + strand, within SM_b21265at 838.548 kb on + strand, within SM_b21265at 838.549 kb on - strand, within SM_b21265at 838.561 kb on - strand, within SM_b21265at 838.785 kb on + strand, within SM_b21265at 838.786 kb on - strand, within SM_b21265at 838.795 kb on + strand, within SM_b21265at 838.795 kb on + strand, within SM_b21265at 838.795 kb on + strand, within SM_b21265at 838.795 kb on + strand, within SM_b21265at 838.796 kb on - strand, within SM_b21265at 838.796 kb on - strand, within SM_b21265at 838.850 kb on + strand, within SM_b21265at 838.851 kb on - strand, within SM_b21265at 838.918 kb on - strand, within SM_b21265at 838.968 kb on + strand, within SM_b21265at 838.969 kb on - strand, within SM_b21265at 839.091 kb on + strand, within SM_b21265at 839.153 kb on + strandat 839.154 kb on - strand, within SM_b21265at 839.372 kb on + strand, within SM_b21265at 839.373 kb on - strand, within SM_b21265at 839.373 kb on - strand, within SM_b21265at 839.375 kb on - strand, within SM_b21265at 839.634 kb on - strandat 840.105 kb on + strand, within SM_b21266at 840.106 kb on - strand, within SM_b21266at 840.106 kb on - strand, within SM_b21266at 840.137 kb on - strand, within SM_b21266at 840.187 kb on + strand, within SM_b21266at 840.339 kb on + strand, within SM_b21266at 840.476 kb on + strand, within SM_b21266at 840.476 kb on + strand, within SM_b21266at 840.477 kb on - strand, within SM_b21266at 840.477 kb on - strand, within SM_b21266

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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837,369 + SM_b21264 0.19 +0.8
837,369 + SM_b21264 0.19 -1.4
837,369 + SM_b21264 0.19 +1.8
837,370 - SM_b21264 0.19 -2.0
837,370 - SM_b21264 0.19 -2.0
837,371 + SM_b21264 0.19 -0.2
837,371 + SM_b21264 0.19 -0.0
837,372 - SM_b21264 0.19 -1.4
837,513 - SM_b21264 0.30 -3.1
837,513 - SM_b21264 0.30 +1.3
837,522 + SM_b21264 0.31 -1.6
837,640 - SM_b21264 0.41 -1.0
837,675 + SM_b21264 0.44 -2.0
837,676 - SM_b21264 0.44 -2.2
837,780 - SM_b21264 0.52 -1.7
837,795 + SM_b21264 0.54 -1.8
837,795 + SM_b21264 0.54 -1.6
837,795 + SM_b21264 0.54 -1.7
837,799 + SM_b21264 0.54 -1.3
837,799 + SM_b21264 0.54 -1.7
837,799 + SM_b21264 0.54 -1.5
837,862 - SM_b21264 0.59 -0.8
837,887 + SM_b21264 0.61 -2.8
837,887 + SM_b21264 0.61 -0.2
837,912 + SM_b21264 0.63 -2.2
837,913 - SM_b21264 0.63 -1.0
837,976 + SM_b21264 0.68 -1.5
837,976 + SM_b21264 0.68 -2.0
837,977 - SM_b21264 0.69 -1.8
838,054 - SM_b21264 0.75 -0.7
838,121 - SM_b21264 0.80 -2.4
838,286 - -2.5
838,316 + +0.1
838,317 - -1.5
838,548 + SM_b21265 0.15 -1.0
838,548 + SM_b21265 0.15 -1.5
838,548 + SM_b21265 0.15 -1.0
838,549 - SM_b21265 0.15 -2.1
838,561 - SM_b21265 0.16 -2.7
838,785 + SM_b21265 0.34 -0.1
838,786 - SM_b21265 0.34 -2.3
838,795 + SM_b21265 0.34 -1.6
838,795 + SM_b21265 0.34 -1.7
838,795 + SM_b21265 0.34 -2.7
838,795 + SM_b21265 0.34 -1.4
838,796 - SM_b21265 0.35 -1.4
838,796 - SM_b21265 0.35 -2.3
838,850 + SM_b21265 0.39 -1.5
838,851 - SM_b21265 0.39 -2.4
838,918 - SM_b21265 0.44 -1.1
838,968 + SM_b21265 0.48 -1.9
838,969 - SM_b21265 0.48 -1.9
839,091 + SM_b21265 0.58 -0.7
839,153 + -0.7
839,154 - SM_b21265 0.63 -1.8
839,372 + SM_b21265 0.81 -2.3
839,373 - SM_b21265 0.81 -2.2
839,373 - SM_b21265 0.81 -0.9
839,375 - SM_b21265 0.81 -1.3
839,634 - -1.1
840,105 + SM_b21266 0.42 -2.7
840,106 - SM_b21266 0.42 -1.2
840,106 - SM_b21266 0.42 -1.7
840,137 - SM_b21266 0.44 -2.3
840,187 + SM_b21266 0.49 +0.4
840,339 + SM_b21266 0.61 -2.2
840,476 + SM_b21266 0.73 -1.7
840,476 + SM_b21266 0.73 -3.0
840,477 - SM_b21266 0.73 -2.8
840,477 - SM_b21266 0.73 -2.6

Or see this region's nucleotide sequence