Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20004

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20002 and SM_b20003 are separated by 58 nucleotidesSM_b20003 and SM_b20004 are separated by 6 nucleotidesSM_b20004 and SM_b20005 are separated by 115 nucleotidesSM_b20005 and SM_b20006 are separated by 185 nucleotides SM_b20002: SM_b20002 - ABC transporter for Lactose, ATPase component (from data), at 5,350 to 6,426 _b20002 SM_b20003: SM_b20003 - pyrroline-5-carboxylate reductase, at 6,485 to 7,261 _b20003 SM_b20004: SM_b20004 - gstR-like transcriptional regulator protein, at 7,268 to 8,173 _b20004 SM_b20005: SM_b20005 - glutathione S-transferase, at 8,289 to 8,900 _b20005 SM_b20006: SM_b20006 - hypothetical protein, at 9,086 to 10,039 _b20006 Position (kb) 7 8 9Strain fitness (log2 ratio) -1 0 1at 6.281 kb on - strand, within SM_b20002at 6.448 kb on + strandat 6.448 kb on + strandat 6.449 kb on - strandat 6.449 kb on - strandat 6.449 kb on - strandat 6.449 kb on - strandat 6.490 kb on + strandat 6.947 kb on + strand, within SM_b20003at 6.948 kb on - strand, within SM_b20003at 6.986 kb on + strand, within SM_b20003at 6.986 kb on + strand, within SM_b20003at 6.987 kb on - strand, within SM_b20003at 7.059 kb on - strand, within SM_b20003at 7.059 kb on - strand, within SM_b20003at 7.549 kb on + strand, within SM_b20004at 7.806 kb on - strand, within SM_b20004at 7.813 kb on + strand, within SM_b20004at 7.980 kb on + strand, within SM_b20004at 7.981 kb on - strand, within SM_b20004at 7.981 kb on - strand, within SM_b20004at 7.981 kb on - strand, within SM_b20004at 7.981 kb on - strand, within SM_b20004at 8.092 kb on + strandat 8.093 kb on - strandat 8.093 kb on - strandat 8.298 kb on + strandat 8.298 kb on + strandat 8.298 kb on + strandat 8.299 kb on - strandat 8.499 kb on + strand, within SM_b20005at 8.764 kb on - strand, within SM_b20005at 8.770 kb on - strand, within SM_b20005at 8.774 kb on - strand, within SM_b20005at 8.812 kb on - strand, within SM_b20005

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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6,281 - SM_b20002 0.86 +0.3
6,448 + -0.2
6,448 + -0.5
6,449 - -0.4
6,449 - -0.2
6,449 - -0.2
6,449 - +0.1
6,490 + -0.2
6,947 + SM_b20003 0.59 +0.2
6,948 - SM_b20003 0.60 -1.5
6,986 + SM_b20003 0.64 +1.1
6,986 + SM_b20003 0.64 -0.5
6,987 - SM_b20003 0.65 -0.7
7,059 - SM_b20003 0.74 -0.3
7,059 - SM_b20003 0.74 -0.0
7,549 + SM_b20004 0.31 +0.3
7,806 - SM_b20004 0.59 -0.0
7,813 + SM_b20004 0.60 -1.1
7,980 + SM_b20004 0.79 +0.0
7,981 - SM_b20004 0.79 +0.5
7,981 - SM_b20004 0.79 +0.6
7,981 - SM_b20004 0.79 +0.2
7,981 - SM_b20004 0.79 +1.7
8,092 + +0.7
8,093 - -0.0
8,093 - -0.4
8,298 + -0.5
8,298 + -1.5
8,298 + +0.1
8,299 - +0.4
8,499 + SM_b20005 0.34 -0.4
8,764 - SM_b20005 0.78 +0.1
8,770 - SM_b20005 0.79 +1.3
8,774 - SM_b20005 0.79 -1.0
8,812 - SM_b20005 0.85 -0.1

Or see this region's nucleotide sequence