Strain Fitness in Sinorhizobium meliloti 1021 around SMc04196

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04195 and SMc04440 are separated by 76 nucleotidesSMc04440 and SMc04196 are separated by 213 nucleotidesSMc04196 and SMc04197 are separated by 141 nucleotidesSMc04197 and SMc04198 are separated by 134 nucleotides SMc04195: SMc04195 - transposase ISRM3, at 2,181,608 to 2,182,810 SMc04195 SMc04440: SMc04440 - hypothetical protein, at 2,182,887 to 2,183,252 SMc04440 SMc04196: SMc04196 - hypothetical protein, at 2,183,466 to 2,184,086 SMc04196 SMc04197: SMc04197 - hypothetical protein, at 2,184,228 to 2,184,746 SMc04197 SMc04198: SMc04198 - phage repressor protein, at 2,184,881 to 2,185,570 SMc04198 Position (kb) 2183 2184 2185Strain fitness (log2 ratio) -2 -1 0 1at 2182.894 kb on + strandat 2182.940 kb on + strand, within SMc04440at 2182.966 kb on + strand, within SMc04440at 2183.068 kb on - strand, within SMc04440at 2183.068 kb on - strand, within SMc04440at 2183.085 kb on + strand, within SMc04440at 2183.093 kb on + strand, within SMc04440at 2183.125 kb on + strand, within SMc04440at 2183.242 kb on - strandat 2183.242 kb on - strandat 2183.247 kb on + strandat 2183.252 kb on + strandat 2183.252 kb on + strandat 2183.252 kb on + strandat 2183.253 kb on - strandat 2183.253 kb on - strandat 2183.253 kb on - strandat 2183.253 kb on - strandat 2183.256 kb on + strandat 2183.256 kb on + strandat 2183.257 kb on - strandat 2183.278 kb on - strandat 2183.278 kb on - strandat 2183.477 kb on + strandat 2183.486 kb on + strandat 2183.486 kb on + strandat 2183.488 kb on + strandat 2183.580 kb on + strand, within SMc04196at 2183.580 kb on + strand, within SMc04196at 2183.590 kb on + strand, within SMc04196at 2183.739 kb on + strand, within SMc04196at 2183.740 kb on - strand, within SMc04196at 2183.740 kb on - strand, within SMc04196at 2183.740 kb on - strand, within SMc04196at 2183.794 kb on + strand, within SMc04196at 2183.818 kb on + strand, within SMc04196at 2183.818 kb on + strand, within SMc04196at 2183.992 kb on - strand, within SMc04196at 2184.707 kb on - strandat 2184.756 kb on + strandat 2184.756 kb on + strandat 2184.826 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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2,182,894 + -0.1
2,182,940 + SMc04440 0.14 -1.8
2,182,966 + SMc04440 0.22 -0.2
2,183,068 - SMc04440 0.49 +0.1
2,183,068 - SMc04440 0.49 -0.8
2,183,085 + SMc04440 0.54 -0.1
2,183,093 + SMc04440 0.56 -0.1
2,183,125 + SMc04440 0.65 +0.3
2,183,242 - -0.5
2,183,242 - -0.0
2,183,247 + -0.3
2,183,252 + -1.1
2,183,252 + -0.3
2,183,252 + +0.7
2,183,253 - -0.1
2,183,253 - -0.4
2,183,253 - -0.0
2,183,253 - -0.3
2,183,256 + +0.3
2,183,256 + +0.4
2,183,257 - -0.3
2,183,278 - +0.6
2,183,278 - -0.4
2,183,477 + +0.1
2,183,486 + +1.7
2,183,486 + +1.7
2,183,488 + -0.2
2,183,580 + SMc04196 0.18 -0.6
2,183,580 + SMc04196 0.18 -1.1
2,183,590 + SMc04196 0.20 -0.9
2,183,739 + SMc04196 0.44 -0.4
2,183,740 - SMc04196 0.44 +0.3
2,183,740 - SMc04196 0.44 +0.0
2,183,740 - SMc04196 0.44 -0.2
2,183,794 + SMc04196 0.53 -2.2
2,183,818 + SMc04196 0.57 +0.1
2,183,818 + SMc04196 0.57 -0.7
2,183,992 - SMc04196 0.85 +0.1
2,184,707 - +0.1
2,184,756 + -0.6
2,184,756 + +1.4
2,184,826 + -0.6

Or see this region's nucleotide sequence