Strain Fitness in Sinorhizobium meliloti 1021 around SMc02503

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02505 and SMc02504 are separated by 14 nucleotidesSMc02504 and SMc02503 are separated by 103 nucleotidesSMc02503 and SMc02502 are separated by 356 nucleotidesSMc02502 and SMc02501 are separated by 116 nucleotides SMc02505: SMc02505 - hypothetical protein, at 3,287,700 to 3,288,584 SMc02505 SMc02504: SMc02504 - transcriptional regulator, at 3,288,599 to 3,289,051 SMc02504 SMc02503: SMc02503 - hypothetical protein, at 3,289,155 to 3,290,258 SMc02503 SMc02502: SMc02502 - F0F1 ATP synthase subunit epsilon, at 3,290,615 to 3,291,025 SMc02502 SMc02501: SMc02501 - F0F1 ATP synthase subunit beta, at 3,291,142 to 3,292,656 SMc02501 Position (kb) 3289 3290 3291Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3288.185 kb on + strand, within SMc02505at 3288.597 kb on + strandat 3288.598 kb on - strandat 3288.598 kb on - strandat 3288.852 kb on + strand, within SMc02504at 3288.852 kb on + strand, within SMc02504at 3288.853 kb on - strand, within SMc02504at 3288.884 kb on + strand, within SMc02504at 3289.052 kb on - strandat 3289.103 kb on + strandat 3289.139 kb on - strandat 3289.220 kb on + strandat 3289.230 kb on + strandat 3289.336 kb on + strand, within SMc02503at 3289.639 kb on - strand, within SMc02503at 3289.677 kb on + strand, within SMc02503at 3289.677 kb on + strand, within SMc02503at 3289.677 kb on + strand, within SMc02503at 3289.678 kb on - strand, within SMc02503at 3289.680 kb on - strand, within SMc02503at 3289.770 kb on + strand, within SMc02503at 3289.845 kb on + strand, within SMc02503at 3289.846 kb on - strand, within SMc02503at 3290.035 kb on - strand, within SMc02503at 3290.049 kb on + strand, within SMc02503at 3290.050 kb on - strand, within SMc02503at 3290.218 kb on - strandat 3290.221 kb on - strandat 3290.221 kb on - strandat 3290.221 kb on - strandat 3290.525 kb on + strandat 3290.525 kb on + strandat 3290.526 kb on - strandat 3290.539 kb on - strandat 3290.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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3,288,185 + SMc02505 0.55 -0.0
3,288,597 + +0.0
3,288,598 - -0.3
3,288,598 - -0.0
3,288,852 + SMc02504 0.56 -1.4
3,288,852 + SMc02504 0.56 -0.9
3,288,853 - SMc02504 0.56 -1.1
3,288,884 + SMc02504 0.63 -1.4
3,289,052 - -3.0
3,289,103 + -0.5
3,289,139 - -1.3
3,289,220 + -1.7
3,289,230 + -1.0
3,289,336 + SMc02503 0.16 -1.4
3,289,639 - SMc02503 0.44 -1.6
3,289,677 + SMc02503 0.47 -1.7
3,289,677 + SMc02503 0.47 -0.8
3,289,677 + SMc02503 0.47 -0.9
3,289,678 - SMc02503 0.47 -3.1
3,289,680 - SMc02503 0.48 +1.0
3,289,770 + SMc02503 0.56 -1.6
3,289,845 + SMc02503 0.62 -0.4
3,289,846 - SMc02503 0.63 -1.2
3,290,035 - SMc02503 0.80 -1.4
3,290,049 + SMc02503 0.81 -1.4
3,290,050 - SMc02503 0.81 -0.4
3,290,218 - -0.2
3,290,221 - +1.8
3,290,221 - +2.8
3,290,221 - -0.1
3,290,525 + -0.2
3,290,525 + -1.1
3,290,526 - -0.2
3,290,539 - -0.1
3,290,593 - +0.6

Or see this region's nucleotide sequence