Strain Fitness in Sinorhizobium meliloti 1021 around SMa5023

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa5022 and SMa5023 overlap by 4 nucleotidesSMa5023 and SMa0444 are separated by 83 nucleotidesSMa0444 and SMa0445 overlap by 4 nucleotides SMa5022: SMa5022 - hypothetical protein, at 236,016 to 236,381 SMa5022 SMa5023: SMa5023 - hypothetical protein, at 236,378 to 236,794 SMa5023 SMa0444: SMa0444 - TRm1b transposase, at 236,878 to 237,708 SMa0444 SMa0445: SMa0445 - TRm1a transposase, at 237,705 to 238,097 SMa0445 Position (kb) 236 237Strain fitness (log2 ratio) -1 0 1at 235.445 kb on - strandat 235.477 kb on + strandat 235.478 kb on - strandat 235.478 kb on - strandat 235.478 kb on - strandat 235.494 kb on + strandat 235.505 kb on - strandat 235.879 kb on + strandat 235.879 kb on + strandat 235.879 kb on + strandat 236.196 kb on - strand, within SMa5022at 236.215 kb on - strand, within SMa5022at 236.262 kb on - strand, within SMa5022at 236.313 kb on + strand, within SMa5022at 236.313 kb on + strand, within SMa5022at 236.314 kb on - strand, within SMa5022at 236.314 kb on - strand, within SMa5022at 236.316 kb on + strand, within SMa5022at 236.316 kb on + strand, within SMa5022at 236.317 kb on - strand, within SMa5022at 236.366 kb on + strandat 236.366 kb on + strandat 236.367 kb on - strandat 236.433 kb on + strand, within SMa5023at 236.513 kb on - strand, within SMa5023at 236.643 kb on + strand, within SMa5023at 236.644 kb on - strand, within SMa5023at 236.828 kb on - strandat 236.954 kb on + strandat 236.954 kb on + strandat 236.954 kb on + strandat 236.954 kb on + strandat 236.955 kb on - strandat 236.955 kb on - strandat 237.036 kb on - strand, within SMa0444

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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235,445 - +0.1
235,477 + -0.8
235,478 - -0.1
235,478 - -0.4
235,478 - -0.4
235,494 + +0.5
235,505 - -1.1
235,879 + +0.7
235,879 + -0.3
235,879 + -0.3
236,196 - SMa5022 0.49 +0.1
236,215 - SMa5022 0.54 -0.1
236,262 - SMa5022 0.67 -1.3
236,313 + SMa5022 0.81 +0.1
236,313 + SMa5022 0.81 -0.5
236,314 - SMa5022 0.81 +1.7
236,314 - SMa5022 0.81 +0.2
236,316 + SMa5022 0.82 -0.1
236,316 + SMa5022 0.82 -0.4
236,317 - SMa5022 0.82 +0.3
236,366 + -0.3
236,366 + +0.7
236,367 - +0.7
236,433 + SMa5023 0.13 +1.7
236,513 - SMa5023 0.32 +1.7
236,643 + SMa5023 0.64 +0.9
236,644 - SMa5023 0.64 +0.3
236,828 - -0.8
236,954 + +0.4
236,954 + -0.6
236,954 + +0.3
236,954 + +0.3
236,955 - +0.4
236,955 - +0.7
237,036 - SMa0444 0.19 -0.8

Or see this region's nucleotide sequence