Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21231

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21230 and SM_b21231 are separated by 68 nucleotidesSM_b21231 and SM_b21232 are separated by 256 nucleotides SM_b21230: SM_b21230 - glycosyltransferase, at 794,503 to 795,585 _b21230 SM_b21231: SM_b21231 - glycosyltransferase, at 795,654 to 796,808 _b21231 SM_b21232: SM_b21232 - nucleotide sugar epimerase dehydratase, at 797,065 to 799,167 _b21232 Position (kb) 795 796 797Strain fitness (log2 ratio) -1 0 1 2 3at 794.666 kb on - strand, within SM_b21230at 794.810 kb on + strand, within SM_b21230at 794.810 kb on + strand, within SM_b21230at 794.811 kb on - strand, within SM_b21230at 795.016 kb on + strand, within SM_b21230at 795.111 kb on - strand, within SM_b21230at 795.116 kb on + strand, within SM_b21230at 795.117 kb on - strand, within SM_b21230at 795.152 kb on + strand, within SM_b21230at 795.153 kb on - strand, within SM_b21230at 795.157 kb on + strand, within SM_b21230at 795.158 kb on - strand, within SM_b21230at 795.179 kb on - strand, within SM_b21230at 795.220 kb on - strand, within SM_b21230at 795.220 kb on - strand, within SM_b21230at 795.320 kb on + strand, within SM_b21230at 795.320 kb on + strand, within SM_b21230at 795.320 kb on + strand, within SM_b21230at 795.321 kb on - strand, within SM_b21230at 795.416 kb on - strand, within SM_b21230at 795.425 kb on + strand, within SM_b21230at 795.426 kb on - strand, within SM_b21230at 795.487 kb on + strandat 795.488 kb on - strandat 795.580 kb on + strandat 795.580 kb on + strandat 795.580 kb on + strandat 795.580 kb on + strandat 795.581 kb on - strandat 795.581 kb on - strandat 795.581 kb on - strandat 795.581 kb on - strandat 795.596 kb on + strandat 795.596 kb on + strandat 795.597 kb on - strandat 795.597 kb on - strandat 795.820 kb on - strand, within SM_b21231at 795.940 kb on + strand, within SM_b21231at 795.940 kb on + strand, within SM_b21231at 796.141 kb on + strand, within SM_b21231at 796.142 kb on - strand, within SM_b21231at 796.321 kb on + strand, within SM_b21231at 796.322 kb on - strand, within SM_b21231at 796.361 kb on - strand, within SM_b21231at 796.379 kb on - strand, within SM_b21231at 796.379 kb on - strand, within SM_b21231at 796.426 kb on - strand, within SM_b21231at 796.426 kb on - strand, within SM_b21231at 796.428 kb on - strand, within SM_b21231at 796.428 kb on - strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.514 kb on + strand, within SM_b21231at 796.514 kb on + strand, within SM_b21231at 796.516 kb on + strand, within SM_b21231at 796.517 kb on - strand, within SM_b21231at 796.517 kb on - strand, within SM_b21231at 796.517 kb on - strand, within SM_b21231at 796.689 kb on + strand, within SM_b21231at 796.920 kb on + strandat 796.920 kb on + strandat 796.920 kb on + strandat 796.921 kb on - strandat 796.956 kb on - strandat 797.055 kb on + strandat 797.055 kb on + strandat 797.546 kb on + strand, within SM_b21232at 797.607 kb on + strand, within SM_b21232at 797.608 kb on - strand, within SM_b21232at 797.765 kb on + strand, within SM_b21232at 797.765 kb on + strand, within SM_b21232at 797.766 kb on - strand, within SM_b21232at 797.766 kb on - strand, within SM_b21232

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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794,666 - SM_b21230 0.15 -0.2
794,810 + SM_b21230 0.28 -0.1
794,810 + SM_b21230 0.28 +0.6
794,811 - SM_b21230 0.28 -0.4
795,016 + SM_b21230 0.47 +0.2
795,111 - SM_b21230 0.56 +0.5
795,116 + SM_b21230 0.57 +0.1
795,117 - SM_b21230 0.57 +1.3
795,152 + SM_b21230 0.60 +0.3
795,153 - SM_b21230 0.60 -0.0
795,157 + SM_b21230 0.60 -0.2
795,158 - SM_b21230 0.60 +0.1
795,179 - SM_b21230 0.62 +0.0
795,220 - SM_b21230 0.66 -0.3
795,220 - SM_b21230 0.66 -1.1
795,320 + SM_b21230 0.75 +0.5
795,320 + SM_b21230 0.75 +0.0
795,320 + SM_b21230 0.75 -0.3
795,321 - SM_b21230 0.76 -0.0
795,416 - SM_b21230 0.84 +0.7
795,425 + SM_b21230 0.85 -0.7
795,426 - SM_b21230 0.85 -0.6
795,487 + +0.5
795,488 - -0.5
795,580 + +0.8
795,580 + -0.2
795,580 + +0.1
795,580 + -0.4
795,581 - -0.6
795,581 - -0.5
795,581 - +1.4
795,581 - -0.2
795,596 + -0.1
795,596 + +0.7
795,597 - -0.8
795,597 - -0.1
795,820 - SM_b21231 0.14 +0.4
795,940 + SM_b21231 0.25 +3.0
795,940 + SM_b21231 0.25 +0.3
796,141 + SM_b21231 0.42 -0.3
796,142 - SM_b21231 0.42 -0.3
796,321 + SM_b21231 0.58 +0.3
796,322 - SM_b21231 0.58 +0.1
796,361 - SM_b21231 0.61 -0.2
796,379 - SM_b21231 0.63 -0.2
796,379 - SM_b21231 0.63 +0.7
796,426 - SM_b21231 0.67 -0.2
796,426 - SM_b21231 0.67 +0.2
796,428 - SM_b21231 0.67 +0.8
796,428 - SM_b21231 0.67 +0.0
796,495 + SM_b21231 0.73 +0.7
796,495 + SM_b21231 0.73 +0.8
796,495 + SM_b21231 0.73 +0.6
796,495 + SM_b21231 0.73 -0.2
796,496 - SM_b21231 0.73 -0.3
796,496 - SM_b21231 0.73 -0.6
796,496 - SM_b21231 0.73 -0.2
796,496 - SM_b21231 0.73 +0.1
796,514 + SM_b21231 0.74 +0.2
796,514 + SM_b21231 0.74 +0.4
796,516 + SM_b21231 0.75 +1.1
796,517 - SM_b21231 0.75 -1.2
796,517 - SM_b21231 0.75 -0.6
796,517 - SM_b21231 0.75 -0.0
796,689 + SM_b21231 0.90 -1.0
796,920 + -0.4
796,920 + +0.0
796,920 + -0.1
796,921 - +0.2
796,956 - -0.2
797,055 + -0.3
797,055 + +0.7
797,546 + SM_b21232 0.23 -0.2
797,607 + SM_b21232 0.26 -0.3
797,608 - SM_b21232 0.26 -0.1
797,765 + SM_b21232 0.33 -0.5
797,765 + SM_b21232 0.33 -0.8
797,766 - SM_b21232 0.33 -0.4
797,766 - SM_b21232 0.33 -0.3

Or see this region's nucleotide sequence