Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20677

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20676 and SM_b20677 are separated by 98 nucleotidesSM_b20677 and SM_b20678 are separated by 47 nucleotides SM_b20676: SM_b20676 - hypothetical protein, at 1,477,767 to 1,478,687 _b20676 SM_b20677: SM_b20677 - ureidoglycolate hydrolase, at 1,478,786 to 1,479,277 _b20677 SM_b20678: SM_b20678 - hydroxypyruvate reductase, at 1,479,325 to 1,480,593 _b20678 Position (kb) 1478 1479 1480Strain fitness (log2 ratio) -2 -1 0 1 2at 1477.888 kb on + strand, within SM_b20676at 1477.888 kb on + strand, within SM_b20676at 1477.888 kb on + strand, within SM_b20676at 1477.889 kb on - strand, within SM_b20676at 1477.889 kb on - strand, within SM_b20676at 1477.889 kb on - strand, within SM_b20676at 1478.043 kb on + strand, within SM_b20676at 1478.044 kb on - strand, within SM_b20676at 1478.339 kb on + strand, within SM_b20676at 1478.744 kb on - strandat 1478.793 kb on + strandat 1478.794 kb on - strandat 1478.794 kb on - strandat 1478.806 kb on - strandat 1478.806 kb on - strandat 1478.836 kb on + strand, within SM_b20677at 1478.836 kb on + strand, within SM_b20677at 1478.836 kb on + strand, within SM_b20677at 1478.836 kb on + strand, within SM_b20677at 1478.837 kb on - strand, within SM_b20677at 1478.837 kb on - strand, within SM_b20677at 1479.087 kb on + strand, within SM_b20677at 1479.087 kb on + strand, within SM_b20677at 1479.088 kb on - strand, within SM_b20677at 1479.272 kb on + strandat 1479.273 kb on - strandat 1479.273 kb on - strandat 1479.480 kb on + strand, within SM_b20678at 1479.568 kb on + strand, within SM_b20678at 1480.118 kb on - strand, within SM_b20678

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
remove
1,477,888 + SM_b20676 0.13 -0.6
1,477,888 + SM_b20676 0.13 +0.1
1,477,888 + SM_b20676 0.13 -1.6
1,477,889 - SM_b20676 0.13 +0.5
1,477,889 - SM_b20676 0.13 -1.6
1,477,889 - SM_b20676 0.13 -0.1
1,478,043 + SM_b20676 0.30 +0.1
1,478,044 - SM_b20676 0.30 -0.3
1,478,339 + SM_b20676 0.62 +0.3
1,478,744 - +0.1
1,478,793 + -1.0
1,478,794 - -0.3
1,478,794 - +0.7
1,478,806 - -0.0
1,478,806 - +2.7
1,478,836 + SM_b20677 0.10 +0.3
1,478,836 + SM_b20677 0.10 -0.1
1,478,836 + SM_b20677 0.10 +0.4
1,478,836 + SM_b20677 0.10 -0.3
1,478,837 - SM_b20677 0.10 +0.3
1,478,837 - SM_b20677 0.10 +0.9
1,479,087 + SM_b20677 0.61 +0.3
1,479,087 + SM_b20677 0.61 +0.1
1,479,088 - SM_b20677 0.61 +0.2
1,479,272 + -1.9
1,479,273 - +0.7
1,479,273 - +0.1
1,479,480 + SM_b20678 0.12 -0.1
1,479,568 + SM_b20678 0.19 -0.1
1,480,118 - SM_b20678 0.62 -1.0

Or see this region's nucleotide sequence