Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01850 and SMc01849 are separated by 37 nucleotides SMc01849 and SMc01848 are separated by 343 nucleotides
SMc01850: SMc01850 - hypothetical protein, at 2,363,271 to 2,364,272
SMc01850
SMc01849: SMc01849 - hydrolase, at 2,364,310 to 2,365,671
SMc01849
SMc01848: SMc01848 - hypothetical protein, at 2,366,015 to 2,367,265
SMc01848
Position (kb)
2364
2365
2366 Strain fitness (log2 ratio)
-1
0
1
2 at 2363.367 kb on - strand at 2363.440 kb on - strand, within SMc01850 at 2363.672 kb on + strand, within SMc01850 at 2363.952 kb on + strand, within SMc01850 at 2363.953 kb on - strand, within SMc01850 at 2364.066 kb on + strand, within SMc01850 at 2364.091 kb on - strand, within SMc01850 at 2364.091 kb on - strand, within SMc01850 at 2364.222 kb on + strand at 2364.222 kb on + strand at 2364.222 kb on + strand at 2364.223 kb on - strand at 2364.225 kb on + strand at 2364.226 kb on - strand at 2364.226 kb on - strand at 2364.264 kb on - strand at 2364.264 kb on - strand at 2364.270 kb on + strand at 2364.270 kb on + strand at 2364.294 kb on - strand at 2364.294 kb on - strand at 2364.294 kb on - strand at 2364.356 kb on + strand at 2364.456 kb on + strand, within SMc01849 at 2364.525 kb on - strand, within SMc01849 at 2364.569 kb on + strand, within SMc01849 at 2364.569 kb on + strand, within SMc01849 at 2364.569 kb on + strand, within SMc01849 at 2364.569 kb on + strand, within SMc01849 at 2364.570 kb on - strand, within SMc01849 at 2364.570 kb on - strand, within SMc01849 at 2364.570 kb on - strand, within SMc01849 at 2364.656 kb on + strand, within SMc01849 at 2364.656 kb on + strand, within SMc01849 at 2364.656 kb on + strand, within SMc01849 at 2364.657 kb on - strand, within SMc01849 at 2364.657 kb on - strand, within SMc01849 at 2364.657 kb on - strand, within SMc01849 at 2364.657 kb on - strand, within SMc01849 at 2364.657 kb on - strand, within SMc01849 at 2364.657 kb on - strand, within SMc01849 at 2364.657 kb on - strand, within SMc01849 at 2364.657 kb on - strand, within SMc01849 at 2364.657 kb on - strand, within SMc01849 at 2364.662 kb on + strand, within SMc01849 at 2364.662 kb on + strand, within SMc01849 at 2364.662 kb on + strand, within SMc01849 at 2364.663 kb on - strand, within SMc01849 at 2364.663 kb on - strand, within SMc01849 at 2364.663 kb on - strand, within SMc01849 at 2364.663 kb on - strand, within SMc01849 at 2364.903 kb on + strand, within SMc01849 at 2364.903 kb on + strand, within SMc01849 at 2365.139 kb on + strand, within SMc01849 at 2365.139 kb on + strand, within SMc01849 at 2365.139 kb on + strand, within SMc01849 at 2365.139 kb on + strand, within SMc01849 at 2365.140 kb on - strand, within SMc01849 at 2365.140 kb on - strand, within SMc01849 at 2365.140 kb on - strand, within SMc01849 at 2365.140 kb on - strand, within SMc01849 at 2365.379 kb on + strand, within SMc01849 at 2365.562 kb on + strand at 2365.629 kb on + strand at 2365.692 kb on + strand at 2365.692 kb on + strand at 2365.693 kb on - strand at 2365.693 kb on - strand at 2365.694 kb on + strand at 2365.731 kb on - strand at 2365.738 kb on + strand at 2365.738 kb on + strand at 2365.738 kb on + strand at 2365.738 kb on + strand at 2365.739 kb on - strand at 2365.979 kb on + strand at 2366.255 kb on + strand, within SMc01848 at 2366.256 kb on - strand, within SMc01848 at 2366.256 kb on - strand, within SMc01848 at 2366.256 kb on - strand, within SMc01848 at 2366.256 kb on - strand, within SMc01848 at 2366.415 kb on - strand, within SMc01848 at 2366.459 kb on + strand, within SMc01848 at 2366.460 kb on - strand, within SMc01848 at 2366.519 kb on + strand, within SMc01848 at 2366.520 kb on - strand, within SMc01848
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM remove 2,363,367 - +0.3 2,363,440 - SMc01850 0.17 +1.8 2,363,672 + SMc01850 0.40 +0.8 2,363,952 + SMc01850 0.68 -0.6 2,363,953 - SMc01850 0.68 -0.2 2,364,066 + SMc01850 0.79 +0.2 2,364,091 - SMc01850 0.82 -0.8 2,364,091 - SMc01850 0.82 -0.2 2,364,222 + -0.1 2,364,222 + -0.8 2,364,222 + -0.7 2,364,223 - -0.2 2,364,225 + +0.1 2,364,226 - +0.5 2,364,226 - +0.8 2,364,264 - +0.9 2,364,264 - -0.5 2,364,270 + +0.2 2,364,270 + +0.2 2,364,294 - -0.6 2,364,294 - +0.1 2,364,294 - +0.2 2,364,356 + +1.1 2,364,456 + SMc01849 0.11 +0.2 2,364,525 - SMc01849 0.16 -0.7 2,364,569 + SMc01849 0.19 -0.6 2,364,569 + SMc01849 0.19 +0.5 2,364,569 + SMc01849 0.19 +0.2 2,364,569 + SMc01849 0.19 -0.1 2,364,570 - SMc01849 0.19 -0.8 2,364,570 - SMc01849 0.19 +0.3 2,364,570 - SMc01849 0.19 +0.1 2,364,656 + SMc01849 0.25 +0.1 2,364,656 + SMc01849 0.25 +0.6 2,364,656 + SMc01849 0.25 -0.4 2,364,657 - SMc01849 0.25 +0.7 2,364,657 - SMc01849 0.25 +0.2 2,364,657 - SMc01849 0.25 -0.1 2,364,657 - SMc01849 0.25 +0.2 2,364,657 - SMc01849 0.25 -0.1 2,364,657 - SMc01849 0.25 -0.7 2,364,657 - SMc01849 0.25 -0.2 2,364,657 - SMc01849 0.25 +0.3 2,364,657 - SMc01849 0.25 +0.5 2,364,662 + SMc01849 0.26 +0.9 2,364,662 + SMc01849 0.26 -0.0 2,364,662 + SMc01849 0.26 +0.0 2,364,663 - SMc01849 0.26 +0.0 2,364,663 - SMc01849 0.26 -0.9 2,364,663 - SMc01849 0.26 -0.6 2,364,663 - SMc01849 0.26 -0.5 2,364,903 + SMc01849 0.44 +0.3 2,364,903 + SMc01849 0.44 +0.0 2,365,139 + SMc01849 0.61 -0.2 2,365,139 + SMc01849 0.61 +0.1 2,365,139 + SMc01849 0.61 +0.0 2,365,139 + SMc01849 0.61 +1.6 2,365,140 - SMc01849 0.61 +0.0 2,365,140 - SMc01849 0.61 +0.6 2,365,140 - SMc01849 0.61 -0.1 2,365,140 - SMc01849 0.61 +0.6 2,365,379 + SMc01849 0.78 +0.0 2,365,562 + -0.6 2,365,629 + -0.1 2,365,692 + -1.7 2,365,692 + +1.8 2,365,693 - +0.9 2,365,693 - -0.0 2,365,694 + -0.1 2,365,731 - +0.6 2,365,738 + -1.7 2,365,738 + -0.0 2,365,738 + -0.2 2,365,738 + +0.2 2,365,739 - -1.0 2,365,979 + -0.1 2,366,255 + SMc01848 0.19 +0.3 2,366,256 - SMc01848 0.19 -0.0 2,366,256 - SMc01848 0.19 -0.4 2,366,256 - SMc01848 0.19 -0.4 2,366,256 - SMc01848 0.19 +0.1 2,366,415 - SMc01848 0.32 -0.2 2,366,459 + SMc01848 0.35 -0.2 2,366,460 - SMc01848 0.36 -0.6 2,366,519 + SMc01848 0.40 +0.5 2,366,520 - SMc01848 0.40 +0.2
Or see this region's nucleotide sequence