Strain Fitness in Sinorhizobium meliloti 1021 around SMc00537

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00538 and SMc00537 are separated by 350 nucleotidesSMc00537 and SMc00536 are separated by 141 nucleotides SMc00538: SMc00538 - hypothetical protein, at 1,924,050 to 1,924,385 SMc00538 SMc00537: SMc00537 - transporter, at 1,924,736 to 1,925,974 SMc00537 SMc00536: SMc00536 - transporter, at 1,926,116 to 1,927,345 SMc00536 Position (kb) 1924 1925 1926Strain fitness (log2 ratio) -2 -1 0 1at 1923.779 kb on + strandat 1923.779 kb on + strandat 1923.811 kb on - strandat 1923.884 kb on - strandat 1923.884 kb on - strandat 1923.897 kb on + strandat 1923.897 kb on + strandat 1923.898 kb on - strandat 1923.994 kb on + strandat 1923.994 kb on + strandat 1923.998 kb on + strandat 1924.362 kb on - strandat 1924.362 kb on - strandat 1924.454 kb on + strandat 1924.477 kb on + strandat 1924.597 kb on + strandat 1924.597 kb on + strandat 1924.598 kb on - strandat 1924.638 kb on + strandat 1924.710 kb on + strandat 1924.711 kb on - strandat 1924.731 kb on - strandat 1924.731 kb on - strandat 1924.731 kb on - strandat 1924.749 kb on + strandat 1924.750 kb on - strandat 1924.907 kb on + strand, within SMc00537at 1924.908 kb on - strand, within SMc00537at 1924.915 kb on - strand, within SMc00537at 1924.922 kb on + strand, within SMc00537at 1924.922 kb on + strand, within SMc00537at 1925.047 kb on - strand, within SMc00537at 1925.092 kb on - strand, within SMc00537at 1925.142 kb on - strand, within SMc00537at 1925.292 kb on + strand, within SMc00537at 1925.293 kb on - strand, within SMc00537at 1925.367 kb on + strand, within SMc00537at 1925.368 kb on - strand, within SMc00537at 1925.368 kb on - strand, within SMc00537at 1925.368 kb on - strand, within SMc00537at 1925.414 kb on + strand, within SMc00537at 1925.414 kb on + strand, within SMc00537at 1925.415 kb on - strand, within SMc00537at 1925.415 kb on - strand, within SMc00537at 1925.415 kb on - strand, within SMc00537at 1925.416 kb on + strand, within SMc00537at 1925.416 kb on + strand, within SMc00537at 1925.417 kb on - strand, within SMc00537at 1925.492 kb on + strand, within SMc00537at 1925.493 kb on - strand, within SMc00537at 1925.697 kb on + strand, within SMc00537at 1925.697 kb on + strand, within SMc00537at 1925.698 kb on - strand, within SMc00537at 1925.698 kb on - strand, within SMc00537at 1925.698 kb on - strand, within SMc00537at 1925.861 kb on - strandat 1925.861 kb on - strandat 1926.516 kb on - strand, within SMc00536at 1926.581 kb on + strand, within SMc00536at 1926.582 kb on - strand, within SMc00536at 1926.755 kb on + strand, within SMc00536at 1926.755 kb on + strand, within SMc00536at 1926.756 kb on - strand, within SMc00536at 1926.756 kb on - strand, within SMc00536at 1926.756 kb on - strand, within SMc00536at 1926.797 kb on + strand, within SMc00536at 1926.798 kb on - strand, within SMc00536at 1926.798 kb on - strand, within SMc00536at 1926.833 kb on + strand, within SMc00536at 1926.834 kb on - strand, within SMc00536

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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1,923,779 + -0.5
1,923,779 + +0.9
1,923,811 - -0.3
1,923,884 - +0.3
1,923,884 - -0.6
1,923,897 + +1.1
1,923,897 + +0.4
1,923,898 - -0.3
1,923,994 + +1.3
1,923,994 + +0.1
1,923,998 + -1.0
1,924,362 - +1.7
1,924,362 - -1.3
1,924,454 + -0.3
1,924,477 + -0.2
1,924,597 + -0.6
1,924,597 + +0.2
1,924,598 - +0.4
1,924,638 + -0.0
1,924,710 + +0.8
1,924,711 - -2.4
1,924,731 - -0.2
1,924,731 - -0.4
1,924,731 - +0.2
1,924,749 + -0.5
1,924,750 - +0.4
1,924,907 + SMc00537 0.14 -0.7
1,924,908 - SMc00537 0.14 -0.0
1,924,915 - SMc00537 0.14 -0.6
1,924,922 + SMc00537 0.15 +0.4
1,924,922 + SMc00537 0.15 -0.8
1,925,047 - SMc00537 0.25 +0.5
1,925,092 - SMc00537 0.29 +0.9
1,925,142 - SMc00537 0.33 +1.0
1,925,292 + SMc00537 0.45 -0.8
1,925,293 - SMc00537 0.45 -0.2
1,925,367 + SMc00537 0.51 -0.1
1,925,368 - SMc00537 0.51 -0.3
1,925,368 - SMc00537 0.51 -0.3
1,925,368 - SMc00537 0.51 -0.1
1,925,414 + SMc00537 0.55 +0.1
1,925,414 + SMc00537 0.55 -0.2
1,925,415 - SMc00537 0.55 +0.4
1,925,415 - SMc00537 0.55 -0.4
1,925,415 - SMc00537 0.55 -1.0
1,925,416 + SMc00537 0.55 +0.0
1,925,416 + SMc00537 0.55 -0.8
1,925,417 - SMc00537 0.55 -0.2
1,925,492 + SMc00537 0.61 -0.0
1,925,493 - SMc00537 0.61 -0.1
1,925,697 + SMc00537 0.78 +0.3
1,925,697 + SMc00537 0.78 -0.2
1,925,698 - SMc00537 0.78 +0.1
1,925,698 - SMc00537 0.78 -0.2
1,925,698 - SMc00537 0.78 -0.5
1,925,861 - +0.2
1,925,861 - +0.2
1,926,516 - SMc00536 0.33 +0.0
1,926,581 + SMc00536 0.38 +0.3
1,926,582 - SMc00536 0.38 +0.6
1,926,755 + SMc00536 0.52 -0.1
1,926,755 + SMc00536 0.52 +0.0
1,926,756 - SMc00536 0.52 +0.2
1,926,756 - SMc00536 0.52 +0.1
1,926,756 - SMc00536 0.52 +1.1
1,926,797 + SMc00536 0.55 -0.0
1,926,798 - SMc00536 0.55 +1.7
1,926,798 - SMc00536 0.55 -1.3
1,926,833 + SMc00536 0.58 -0.6
1,926,834 - SMc00536 0.58 -0.5

Or see this region's nucleotide sequence