Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20929 and SM_b20930 are separated by 28 nucleotides SM_b20930 and SM_b20931 are separated by 209 nucleotides SM_b20931 and SM_b20932 are separated by 65 nucleotides
SM_b20929: SM_b20929 - sugar uptake ABC transporter permease, at 1,152,893 to 1,153,891
_b20929
SM_b20930: SM_b20930 - sugar uptake ABC transporter ATP-binding protein, at 1,153,920 to 1,154,660
_b20930
SM_b20931: SM_b20931 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,154,870 to 1,156,054
_b20931
SM_b20932: SM_b20932 - endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein, at 1,156,120 to 1,157,517
_b20932
Position (kb)
1154
1155
1156
1157 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1153.882 kb on + strand at 1153.882 kb on + strand at 1153.883 kb on - strand at 1154.040 kb on - strand, within SM_b20930 at 1154.055 kb on - strand, within SM_b20930 at 1154.055 kb on - strand, within SM_b20930 at 1154.299 kb on + strand, within SM_b20930 at 1154.300 kb on - strand, within SM_b20930 at 1154.300 kb on - strand, within SM_b20930 at 1154.320 kb on - strand, within SM_b20930 at 1154.668 kb on + strand at 1154.736 kb on + strand at 1154.737 kb on - strand at 1154.790 kb on + strand at 1154.790 kb on + strand at 1154.848 kb on + strand at 1154.848 kb on + strand at 1154.849 kb on - strand at 1154.849 kb on - strand at 1154.849 kb on - strand at 1154.849 kb on - strand at 1154.852 kb on + strand at 1154.852 kb on + strand at 1154.852 kb on + strand at 1154.853 kb on - strand at 1154.853 kb on - strand at 1154.853 kb on - strand at 1154.853 kb on - strand at 1154.853 kb on - strand at 1155.079 kb on - strand, within SM_b20931 at 1155.233 kb on + strand, within SM_b20931 at 1155.453 kb on - strand, within SM_b20931 at 1155.453 kb on - strand, within SM_b20931 at 1155.471 kb on - strand, within SM_b20931 at 1155.471 kb on - strand, within SM_b20931 at 1155.471 kb on - strand, within SM_b20931 at 1155.497 kb on + strand, within SM_b20931 at 1155.587 kb on - strand, within SM_b20931 at 1155.938 kb on + strand at 1155.939 kb on - strand at 1155.939 kb on - strand at 1155.940 kb on + strand at 1155.940 kb on + strand at 1155.940 kb on + strand at 1155.940 kb on + strand at 1155.941 kb on - strand at 1156.149 kb on - strand at 1156.149 kb on - strand at 1156.244 kb on + strand at 1156.244 kb on + strand at 1156.245 kb on - strand at 1156.245 kb on - strand at 1156.304 kb on + strand, within SM_b20932 at 1156.340 kb on + strand, within SM_b20932 at 1156.341 kb on - strand, within SM_b20932 at 1156.341 kb on - strand, within SM_b20932 at 1156.341 kb on - strand, within SM_b20932 at 1156.426 kb on + strand, within SM_b20932 at 1156.426 kb on + strand, within SM_b20932 at 1156.426 kb on + strand, within SM_b20932 at 1156.427 kb on - strand, within SM_b20932 at 1156.427 kb on - strand, within SM_b20932 at 1156.435 kb on - strand, within SM_b20932 at 1156.565 kb on + strand, within SM_b20932 at 1156.565 kb on + strand, within SM_b20932 at 1156.586 kb on + strand, within SM_b20932 at 1156.587 kb on - strand, within SM_b20932 at 1156.611 kb on - strand, within SM_b20932 at 1156.617 kb on - strand, within SM_b20932 at 1156.617 kb on - strand, within SM_b20932 at 1156.718 kb on + strand, within SM_b20932 at 1156.731 kb on + strand, within SM_b20932 at 1156.732 kb on - strand, within SM_b20932 at 1156.732 kb on - strand, within SM_b20932 at 1156.733 kb on + strand, within SM_b20932 at 1156.733 kb on + strand, within SM_b20932 at 1156.734 kb on - strand, within SM_b20932 at 1156.734 kb on - strand, within SM_b20932 at 1156.752 kb on + strand, within SM_b20932 at 1156.815 kb on + strand, within SM_b20932 at 1156.933 kb on + strand at 1157.039 kb on - strand, within SM_b20932 at 1157.051 kb on + strand, within SM_b20932
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM remove 1,153,882 + -1.1 1,153,882 + -0.0 1,153,883 - +0.8 1,154,040 - SM_b20930 0.16 -0.1 1,154,055 - SM_b20930 0.18 -0.3 1,154,055 - SM_b20930 0.18 -0.6 1,154,299 + SM_b20930 0.51 -1.0 1,154,300 - SM_b20930 0.51 +0.8 1,154,300 - SM_b20930 0.51 +0.3 1,154,320 - SM_b20930 0.54 -0.0 1,154,668 + -1.8 1,154,736 + +1.1 1,154,737 - -0.4 1,154,790 + +0.4 1,154,790 + +0.3 1,154,848 + +0.7 1,154,848 + +0.1 1,154,849 - +0.1 1,154,849 - -0.3 1,154,849 - +0.1 1,154,849 - -0.3 1,154,852 + +0.2 1,154,852 + -0.7 1,154,852 + +0.0 1,154,853 - +0.4 1,154,853 - +0.1 1,154,853 - -0.6 1,154,853 - -0.7 1,154,853 - +0.4 1,155,079 - SM_b20931 0.18 -2.3 1,155,233 + SM_b20931 0.31 -0.5 1,155,453 - SM_b20931 0.49 -0.9 1,155,453 - SM_b20931 0.49 -0.2 1,155,471 - SM_b20931 0.51 -0.5 1,155,471 - SM_b20931 0.51 -0.7 1,155,471 - SM_b20931 0.51 -0.3 1,155,497 + SM_b20931 0.53 -1.1 1,155,587 - SM_b20931 0.61 +0.7 1,155,938 + +1.0 1,155,939 - +0.4 1,155,939 - +0.1 1,155,940 + +0.2 1,155,940 + -0.1 1,155,940 + +0.1 1,155,940 + +0.2 1,155,941 - +0.4 1,156,149 - -0.1 1,156,149 - -0.4 1,156,244 + -1.5 1,156,244 + +0.2 1,156,245 - -0.4 1,156,245 - +0.5 1,156,304 + SM_b20932 0.13 +0.6 1,156,340 + SM_b20932 0.16 +0.0 1,156,341 - SM_b20932 0.16 -0.2 1,156,341 - SM_b20932 0.16 -1.0 1,156,341 - SM_b20932 0.16 -0.9 1,156,426 + SM_b20932 0.22 -0.3 1,156,426 + SM_b20932 0.22 +0.3 1,156,426 + SM_b20932 0.22 -0.3 1,156,427 - SM_b20932 0.22 +1.9 1,156,427 - SM_b20932 0.22 -1.5 1,156,435 - SM_b20932 0.23 +0.1 1,156,565 + SM_b20932 0.32 -0.3 1,156,565 + SM_b20932 0.32 -0.1 1,156,586 + SM_b20932 0.33 -0.1 1,156,587 - SM_b20932 0.33 -0.4 1,156,611 - SM_b20932 0.35 -0.0 1,156,617 - SM_b20932 0.36 -0.3 1,156,617 - SM_b20932 0.36 +0.2 1,156,718 + SM_b20932 0.43 +0.1 1,156,731 + SM_b20932 0.44 -0.5 1,156,732 - SM_b20932 0.44 -0.1 1,156,732 - SM_b20932 0.44 -0.7 1,156,733 + SM_b20932 0.44 -0.5 1,156,733 + SM_b20932 0.44 -0.9 1,156,734 - SM_b20932 0.44 +0.7 1,156,734 - SM_b20932 0.44 -1.8 1,156,752 + SM_b20932 0.45 -0.2 1,156,815 + SM_b20932 0.50 -1.1 1,156,933 + +0.3 1,157,039 - SM_b20932 0.66 -0.7 1,157,051 + SM_b20932 0.67 -0.5
Or see this region's nucleotide sequence