Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20931

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20929 and SM_b20930 are separated by 28 nucleotidesSM_b20930 and SM_b20931 are separated by 209 nucleotidesSM_b20931 and SM_b20932 are separated by 65 nucleotides SM_b20929: SM_b20929 - sugar uptake ABC transporter permease, at 1,152,893 to 1,153,891 _b20929 SM_b20930: SM_b20930 - sugar uptake ABC transporter ATP-binding protein, at 1,153,920 to 1,154,660 _b20930 SM_b20931: SM_b20931 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,154,870 to 1,156,054 _b20931 SM_b20932: SM_b20932 - endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein, at 1,156,120 to 1,157,517 _b20932 Position (kb) 1154 1155 1156 1157Strain fitness (log2 ratio) -2 -1 0 1 2at 1153.882 kb on + strandat 1153.882 kb on + strandat 1153.883 kb on - strandat 1154.040 kb on - strand, within SM_b20930at 1154.055 kb on - strand, within SM_b20930at 1154.055 kb on - strand, within SM_b20930at 1154.299 kb on + strand, within SM_b20930at 1154.300 kb on - strand, within SM_b20930at 1154.300 kb on - strand, within SM_b20930at 1154.320 kb on - strand, within SM_b20930at 1154.668 kb on + strandat 1154.736 kb on + strandat 1154.737 kb on - strandat 1154.790 kb on + strandat 1154.790 kb on + strandat 1154.848 kb on + strandat 1154.848 kb on + strandat 1154.849 kb on - strandat 1154.849 kb on - strandat 1154.849 kb on - strandat 1154.849 kb on - strandat 1154.852 kb on + strandat 1154.852 kb on + strandat 1154.852 kb on + strandat 1154.853 kb on - strandat 1154.853 kb on - strandat 1154.853 kb on - strandat 1154.853 kb on - strandat 1154.853 kb on - strandat 1155.079 kb on - strand, within SM_b20931at 1155.233 kb on + strand, within SM_b20931at 1155.453 kb on - strand, within SM_b20931at 1155.453 kb on - strand, within SM_b20931at 1155.471 kb on - strand, within SM_b20931at 1155.471 kb on - strand, within SM_b20931at 1155.471 kb on - strand, within SM_b20931at 1155.497 kb on + strand, within SM_b20931at 1155.587 kb on - strand, within SM_b20931at 1155.938 kb on + strandat 1155.939 kb on - strandat 1155.939 kb on - strandat 1155.940 kb on + strandat 1155.940 kb on + strandat 1155.940 kb on + strandat 1155.940 kb on + strandat 1155.941 kb on - strandat 1156.149 kb on - strandat 1156.149 kb on - strandat 1156.244 kb on + strandat 1156.244 kb on + strandat 1156.245 kb on - strandat 1156.245 kb on - strandat 1156.304 kb on + strand, within SM_b20932at 1156.340 kb on + strand, within SM_b20932at 1156.341 kb on - strand, within SM_b20932at 1156.341 kb on - strand, within SM_b20932at 1156.341 kb on - strand, within SM_b20932at 1156.426 kb on + strand, within SM_b20932at 1156.426 kb on + strand, within SM_b20932at 1156.426 kb on + strand, within SM_b20932at 1156.427 kb on - strand, within SM_b20932at 1156.427 kb on - strand, within SM_b20932at 1156.435 kb on - strand, within SM_b20932at 1156.565 kb on + strand, within SM_b20932at 1156.565 kb on + strand, within SM_b20932at 1156.586 kb on + strand, within SM_b20932at 1156.587 kb on - strand, within SM_b20932at 1156.611 kb on - strand, within SM_b20932at 1156.617 kb on - strand, within SM_b20932at 1156.617 kb on - strand, within SM_b20932at 1156.718 kb on + strand, within SM_b20932at 1156.731 kb on + strand, within SM_b20932at 1156.732 kb on - strand, within SM_b20932at 1156.732 kb on - strand, within SM_b20932at 1156.733 kb on + strand, within SM_b20932at 1156.733 kb on + strand, within SM_b20932at 1156.734 kb on - strand, within SM_b20932at 1156.734 kb on - strand, within SM_b20932at 1156.752 kb on + strand, within SM_b20932at 1156.815 kb on + strand, within SM_b20932at 1156.933 kb on + strandat 1157.039 kb on - strand, within SM_b20932at 1157.051 kb on + strand, within SM_b20932

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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1,153,882 + -1.1
1,153,882 + -0.0
1,153,883 - +0.8
1,154,040 - SM_b20930 0.16 -0.1
1,154,055 - SM_b20930 0.18 -0.3
1,154,055 - SM_b20930 0.18 -0.6
1,154,299 + SM_b20930 0.51 -1.0
1,154,300 - SM_b20930 0.51 +0.8
1,154,300 - SM_b20930 0.51 +0.3
1,154,320 - SM_b20930 0.54 -0.0
1,154,668 + -1.8
1,154,736 + +1.1
1,154,737 - -0.4
1,154,790 + +0.4
1,154,790 + +0.3
1,154,848 + +0.7
1,154,848 + +0.1
1,154,849 - +0.1
1,154,849 - -0.3
1,154,849 - +0.1
1,154,849 - -0.3
1,154,852 + +0.2
1,154,852 + -0.7
1,154,852 + +0.0
1,154,853 - +0.4
1,154,853 - +0.1
1,154,853 - -0.6
1,154,853 - -0.7
1,154,853 - +0.4
1,155,079 - SM_b20931 0.18 -2.3
1,155,233 + SM_b20931 0.31 -0.5
1,155,453 - SM_b20931 0.49 -0.9
1,155,453 - SM_b20931 0.49 -0.2
1,155,471 - SM_b20931 0.51 -0.5
1,155,471 - SM_b20931 0.51 -0.7
1,155,471 - SM_b20931 0.51 -0.3
1,155,497 + SM_b20931 0.53 -1.1
1,155,587 - SM_b20931 0.61 +0.7
1,155,938 + +1.0
1,155,939 - +0.4
1,155,939 - +0.1
1,155,940 + +0.2
1,155,940 + -0.1
1,155,940 + +0.1
1,155,940 + +0.2
1,155,941 - +0.4
1,156,149 - -0.1
1,156,149 - -0.4
1,156,244 + -1.5
1,156,244 + +0.2
1,156,245 - -0.4
1,156,245 - +0.5
1,156,304 + SM_b20932 0.13 +0.6
1,156,340 + SM_b20932 0.16 +0.0
1,156,341 - SM_b20932 0.16 -0.2
1,156,341 - SM_b20932 0.16 -1.0
1,156,341 - SM_b20932 0.16 -0.9
1,156,426 + SM_b20932 0.22 -0.3
1,156,426 + SM_b20932 0.22 +0.3
1,156,426 + SM_b20932 0.22 -0.3
1,156,427 - SM_b20932 0.22 +1.9
1,156,427 - SM_b20932 0.22 -1.5
1,156,435 - SM_b20932 0.23 +0.1
1,156,565 + SM_b20932 0.32 -0.3
1,156,565 + SM_b20932 0.32 -0.1
1,156,586 + SM_b20932 0.33 -0.1
1,156,587 - SM_b20932 0.33 -0.4
1,156,611 - SM_b20932 0.35 -0.0
1,156,617 - SM_b20932 0.36 -0.3
1,156,617 - SM_b20932 0.36 +0.2
1,156,718 + SM_b20932 0.43 +0.1
1,156,731 + SM_b20932 0.44 -0.5
1,156,732 - SM_b20932 0.44 -0.1
1,156,732 - SM_b20932 0.44 -0.7
1,156,733 + SM_b20932 0.44 -0.5
1,156,733 + SM_b20932 0.44 -0.9
1,156,734 - SM_b20932 0.44 +0.7
1,156,734 - SM_b20932 0.44 -1.8
1,156,752 + SM_b20932 0.45 -0.2
1,156,815 + SM_b20932 0.50 -1.1
1,156,933 + +0.3
1,157,039 - SM_b20932 0.66 -0.7
1,157,051 + SM_b20932 0.67 -0.5

Or see this region's nucleotide sequence