Strain Fitness in Sinorhizobium meliloti 1021 around SMc04128

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04129 and SMc04128 are separated by 97 nucleotidesSMc04128 and SMc04127 are separated by 718 nucleotides SMc04129: SMc04129 - oxidoreductase, at 143,458 to 144,759 SMc04129 SMc04128: SMc04128 - heavy metal transporting ATPase, at 144,857 to 147,088 SMc04128 SMc04127: SMc04127 - ABC transporter ATP-binding protein, at 147,807 to 149,342 SMc04127 Position (kb) 144 145 146 147 148Strain fitness (log2 ratio) -1 0 1 2 3at 143.935 kb on + strand, within SMc04129at 143.936 kb on - strand, within SMc04129at 143.963 kb on - strand, within SMc04129at 143.983 kb on + strand, within SMc04129at 144.100 kb on + strand, within SMc04129at 144.100 kb on + strand, within SMc04129at 144.101 kb on - strand, within SMc04129at 144.101 kb on - strand, within SMc04129at 144.101 kb on - strand, within SMc04129at 144.101 kb on - strand, within SMc04129at 144.169 kb on + strand, within SMc04129at 144.169 kb on + strand, within SMc04129at 144.208 kb on + strand, within SMc04129at 144.209 kb on - strand, within SMc04129at 144.235 kb on + strand, within SMc04129at 144.236 kb on - strand, within SMc04129at 144.328 kb on + strand, within SMc04129at 144.328 kb on + strand, within SMc04129at 144.340 kb on - strand, within SMc04129at 144.340 kb on - strand, within SMc04129at 144.381 kb on + strand, within SMc04129at 144.410 kb on - strand, within SMc04129at 144.526 kb on + strand, within SMc04129at 144.750 kb on + strandat 144.750 kb on + strandat 144.825 kb on + strandat 144.825 kb on + strandat 144.844 kb on + strandat 144.845 kb on - strandat 144.939 kb on + strandat 144.940 kb on - strandat 145.062 kb on - strandat 145.301 kb on + strand, within SMc04128at 145.302 kb on - strand, within SMc04128at 145.560 kb on + strand, within SMc04128at 145.560 kb on + strand, within SMc04128at 145.561 kb on - strand, within SMc04128at 145.849 kb on + strand, within SMc04128at 145.849 kb on + strand, within SMc04128at 145.850 kb on - strand, within SMc04128at 145.850 kb on - strand, within SMc04128at 145.937 kb on + strand, within SMc04128at 145.938 kb on - strand, within SMc04128at 145.938 kb on - strand, within SMc04128at 146.021 kb on + strand, within SMc04128at 146.022 kb on - strand, within SMc04128at 146.733 kb on + strand, within SMc04128at 146.734 kb on - strand, within SMc04128at 146.734 kb on - strand, within SMc04128at 146.734 kb on - strand, within SMc04128at 146.734 kb on - strand, within SMc04128at 147.136 kb on + strandat 147.137 kb on - strandat 147.137 kb on - strandat 147.143 kb on + strandat 147.143 kb on + strandat 147.144 kb on - strandat 147.144 kb on - strandat 147.144 kb on - strandat 147.145 kb on + strandat 147.145 kb on + strandat 147.145 kb on + strandat 147.145 kb on + strandat 147.145 kb on + strandat 147.145 kb on + strandat 147.145 kb on + strandat 147.146 kb on - strandat 147.146 kb on - strandat 147.146 kb on - strandat 147.146 kb on - strandat 147.146 kb on - strandat 147.146 kb on - strandat 147.146 kb on - strandat 147.146 kb on - strandat 147.146 kb on - strandat 147.146 kb on - strandat 147.146 kb on - strandat 147.146 kb on - strandat 147.149 kb on + strandat 147.149 kb on + strandat 147.149 kb on + strandat 147.150 kb on - strandat 147.150 kb on - strandat 147.308 kb on + strandat 147.341 kb on + strandat 147.387 kb on - strandat 147.387 kb on - strandat 147.458 kb on + strandat 147.579 kb on + strandat 147.580 kb on - strandat 147.580 kb on - strandat 147.638 kb on - strandat 147.639 kb on + strandat 147.669 kb on - strandat 147.676 kb on + strandat 147.678 kb on + strandat 147.723 kb on + strandat 147.724 kb on - strandat 147.729 kb on + strandat 147.731 kb on + strandat 147.732 kb on - strandat 147.732 kb on - strandat 147.807 kb on - strandat 147.807 kb on - strandat 147.815 kb on + strandat 147.815 kb on + strandat 147.816 kb on - strandat 147.838 kb on + strandat 147.884 kb on + strandat 147.884 kb on + strandat 147.960 kb on + strandat 147.969 kb on + strand, within SMc04127at 147.969 kb on + strand, within SMc04127

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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143,935 + SMc04129 0.37 +1.2
143,936 - SMc04129 0.37 -0.2
143,963 - SMc04129 0.39 -0.4
143,983 + SMc04129 0.40 -0.1
144,100 + SMc04129 0.49 -0.4
144,100 + SMc04129 0.49 -0.5
144,101 - SMc04129 0.49 +0.0
144,101 - SMc04129 0.49 -0.1
144,101 - SMc04129 0.49 +0.6
144,101 - SMc04129 0.49 -0.0
144,169 + SMc04129 0.55 -0.2
144,169 + SMc04129 0.55 +0.9
144,208 + SMc04129 0.58 +0.1
144,209 - SMc04129 0.58 +0.4
144,235 + SMc04129 0.60 -0.2
144,236 - SMc04129 0.60 +0.2
144,328 + SMc04129 0.67 -0.1
144,328 + SMc04129 0.67 +0.4
144,340 - SMc04129 0.68 -0.3
144,340 - SMc04129 0.68 -0.5
144,381 + SMc04129 0.71 -0.2
144,410 - SMc04129 0.73 -0.1
144,526 + SMc04129 0.82 -0.0
144,750 + -0.0
144,750 + -0.6
144,825 + -0.2
144,825 + +0.1
144,844 + -1.0
144,845 - +0.2
144,939 + -0.4
144,940 - -0.2
145,062 - -0.1
145,301 + SMc04128 0.20 -0.3
145,302 - SMc04128 0.20 +0.4
145,560 + SMc04128 0.31 -0.1
145,560 + SMc04128 0.31 -0.1
145,561 - SMc04128 0.32 +0.4
145,849 + SMc04128 0.44 -0.3
145,849 + SMc04128 0.44 -0.3
145,850 - SMc04128 0.44 -0.1
145,850 - SMc04128 0.44 -0.1
145,937 + SMc04128 0.48 +0.9
145,938 - SMc04128 0.48 -0.8
145,938 - SMc04128 0.48 +0.7
146,021 + SMc04128 0.52 -0.1
146,022 - SMc04128 0.52 +0.1
146,733 + SMc04128 0.84 -1.2
146,734 - SMc04128 0.84 +0.0
146,734 - SMc04128 0.84 -0.2
146,734 - SMc04128 0.84 -0.5
146,734 - SMc04128 0.84 -0.4
147,136 + +0.4
147,137 - +0.2
147,137 - -0.4
147,143 + -0.1
147,143 + +0.4
147,144 - -0.0
147,144 - -0.3
147,144 - +0.3
147,145 + +0.5
147,145 + -0.0
147,145 + +0.5
147,145 + -0.3
147,145 + -0.1
147,145 + +0.0
147,145 + +0.0
147,146 - +0.2
147,146 - +0.5
147,146 - -0.5
147,146 - -0.0
147,146 - -0.1
147,146 - -0.5
147,146 - +0.5
147,146 - +0.0
147,146 - -0.2
147,146 - -0.9
147,146 - +0.4
147,146 - +1.0
147,149 + +0.8
147,149 + +0.1
147,149 + +0.3
147,150 - -0.8
147,150 - -0.5
147,308 + -0.3
147,341 + +0.2
147,387 - -0.1
147,387 - -0.1
147,458 + +1.0
147,579 + -0.4
147,580 - -0.2
147,580 - -1.1
147,638 - -0.8
147,639 + -1.3
147,669 - -0.7
147,676 + +0.8
147,678 + -0.7
147,723 + +0.8
147,724 - -0.1
147,729 + +2.8
147,731 + -0.8
147,732 - -0.2
147,732 - -0.1
147,807 - -0.2
147,807 - -0.4
147,815 + +0.3
147,815 + -1.7
147,816 - -0.1
147,838 + -0.4
147,884 + +0.2
147,884 + -0.9
147,960 + -0.5
147,969 + SMc04127 0.11 -0.2
147,969 + SMc04127 0.11 -0.4

Or see this region's nucleotide sequence