Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00951 and SMc00952 are separated by 82 nucleotides SMc00952 and SMc00953 are separated by 90 nucleotides SMc00953 and SMc00954 are separated by 519 nucleotides
SMc00951: SMc00951 - hypothetical protein, at 1,777,786 to 1,779,600
SMc00951
SMc00952: SMc00952 - hypothetical protein, at 1,779,683 to 1,780,348
SMc00952
SMc00953: SMc00953 - transcriptional regulator, at 1,780,439 to 1,781,368
SMc00953
SMc00954: SMc00954 - hypothetical protein, at 1,781,888 to 1,784,107
SMc00954
Position (kb)
1780
1781
1782 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1779.647 kb on + strand at 1779.647 kb on + strand at 1779.647 kb on + strand at 1779.647 kb on + strand at 1779.720 kb on + strand at 1779.720 kb on + strand at 1779.735 kb on - strand at 1779.813 kb on - strand, within SMc00952 at 1779.854 kb on - strand, within SMc00952 at 1779.854 kb on - strand, within SMc00952 at 1779.854 kb on - strand, within SMc00952 at 1780.105 kb on - strand, within SMc00952 at 1780.260 kb on - strand, within SMc00952 at 1780.260 kb on - strand, within SMc00952 at 1780.473 kb on - strand at 1780.521 kb on + strand at 1780.522 kb on - strand at 1780.532 kb on + strand, within SMc00953 at 1780.552 kb on + strand, within SMc00953 at 1780.552 kb on + strand, within SMc00953 at 1780.552 kb on + strand, within SMc00953 at 1780.552 kb on + strand, within SMc00953 at 1780.553 kb on - strand, within SMc00953 at 1780.553 kb on - strand, within SMc00953 at 1780.607 kb on + strand, within SMc00953 at 1780.607 kb on + strand, within SMc00953 at 1780.608 kb on - strand, within SMc00953 at 1780.691 kb on + strand, within SMc00953 at 1780.691 kb on + strand, within SMc00953 at 1780.691 kb on + strand, within SMc00953 at 1780.692 kb on - strand, within SMc00953 at 1780.702 kb on + strand, within SMc00953 at 1780.702 kb on + strand, within SMc00953 at 1780.702 kb on + strand, within SMc00953 at 1780.702 kb on + strand, within SMc00953 at 1780.702 kb on + strand, within SMc00953 at 1780.702 kb on + strand, within SMc00953 at 1780.703 kb on - strand, within SMc00953 at 1780.703 kb on - strand, within SMc00953 at 1780.842 kb on + strand, within SMc00953 at 1780.860 kb on - strand, within SMc00953 at 1780.860 kb on - strand, within SMc00953 at 1781.069 kb on + strand, within SMc00953 at 1781.069 kb on + strand, within SMc00953 at 1781.069 kb on + strand, within SMc00953 at 1781.070 kb on - strand, within SMc00953 at 1781.070 kb on - strand, within SMc00953 at 1781.070 kb on - strand, within SMc00953 at 1781.071 kb on + strand, within SMc00953 at 1781.071 kb on + strand, within SMc00953 at 1781.072 kb on - strand, within SMc00953 at 1781.330 kb on + strand at 1781.331 kb on - strand at 1781.359 kb on - strand at 1781.359 kb on - strand at 1781.359 kb on - strand at 1781.501 kb on + strand at 1781.501 kb on + strand at 1781.501 kb on + strand at 1781.501 kb on + strand at 1781.502 kb on - strand at 1781.502 kb on - strand at 1781.502 kb on - strand at 1781.525 kb on + strand at 1781.526 kb on - strand at 1781.542 kb on + strand at 1781.542 kb on + strand at 1781.558 kb on + strand at 1781.559 kb on - strand at 1781.559 kb on - strand at 1781.685 kb on + strand at 1781.686 kb on - strand at 1781.740 kb on + strand at 1781.740 kb on + strand at 1781.740 kb on + strand at 1781.740 kb on + strand at 1781.740 kb on + strand at 1781.741 kb on - strand at 1781.741 kb on - strand at 1781.754 kb on + strand at 1781.754 kb on + strand at 1781.755 kb on - strand at 1781.755 kb on - strand at 1781.769 kb on + strand at 1781.865 kb on + strand at 1781.866 kb on - strand at 1781.866 kb on - strand at 1781.866 kb on - strand at 1781.866 kb on - strand at 1781.879 kb on + strand at 1781.879 kb on + strand at 1781.879 kb on + strand at 1781.880 kb on - strand at 1781.880 kb on - strand at 1782.033 kb on - strand at 1782.033 kb on - strand at 1782.152 kb on + strand, within SMc00954 at 1782.152 kb on + strand, within SMc00954 at 1782.203 kb on + strand, within SMc00954 at 1782.203 kb on + strand, within SMc00954 at 1782.204 kb on - strand, within SMc00954 at 1782.206 kb on + strand, within SMc00954 at 1782.206 kb on + strand, within SMc00954 at 1782.206 kb on + strand, within SMc00954 at 1782.207 kb on - strand, within SMc00954 at 1782.278 kb on + strand, within SMc00954 at 1782.280 kb on + strand, within SMc00954 at 1782.280 kb on + strand, within SMc00954 at 1782.280 kb on + strand, within SMc00954 at 1782.280 kb on + strand, within SMc00954 at 1782.281 kb on - strand, within SMc00954 at 1782.281 kb on - strand, within SMc00954 at 1782.281 kb on - strand, within SMc00954 at 1782.317 kb on + strand, within SMc00954 at 1782.323 kb on + strand, within SMc00954
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM remove 1,779,647 + -0.2 1,779,647 + -0.4 1,779,647 + +0.3 1,779,647 + +0.8 1,779,720 + -0.2 1,779,720 + +1.0 1,779,735 - -0.5 1,779,813 - SMc00952 0.20 +0.5 1,779,854 - SMc00952 0.26 +0.5 1,779,854 - SMc00952 0.26 +1.7 1,779,854 - SMc00952 0.26 -0.2 1,780,105 - SMc00952 0.63 -0.7 1,780,260 - SMc00952 0.87 -0.2 1,780,260 - SMc00952 0.87 -0.3 1,780,473 - +0.2 1,780,521 + +0.1 1,780,522 - +0.1 1,780,532 + SMc00953 0.10 -0.3 1,780,552 + SMc00953 0.12 +0.9 1,780,552 + SMc00953 0.12 -1.0 1,780,552 + SMc00953 0.12 -0.2 1,780,552 + SMc00953 0.12 -1.0 1,780,553 - SMc00953 0.12 -1.2 1,780,553 - SMc00953 0.12 -1.5 1,780,607 + SMc00953 0.18 +0.1 1,780,607 + SMc00953 0.18 -0.9 1,780,608 - SMc00953 0.18 +0.9 1,780,691 + SMc00953 0.27 -0.3 1,780,691 + SMc00953 0.27 -1.1 1,780,691 + SMc00953 0.27 +0.0 1,780,692 - SMc00953 0.27 -0.5 1,780,702 + SMc00953 0.28 -0.5 1,780,702 + SMc00953 0.28 -0.2 1,780,702 + SMc00953 0.28 +0.1 1,780,702 + SMc00953 0.28 +0.2 1,780,702 + SMc00953 0.28 -0.4 1,780,702 + SMc00953 0.28 -0.4 1,780,703 - SMc00953 0.28 +0.9 1,780,703 - SMc00953 0.28 +0.0 1,780,842 + SMc00953 0.43 -0.2 1,780,860 - SMc00953 0.45 -0.0 1,780,860 - SMc00953 0.45 -1.3 1,781,069 + SMc00953 0.68 -1.1 1,781,069 + SMc00953 0.68 +0.1 1,781,069 + SMc00953 0.68 +0.6 1,781,070 - SMc00953 0.68 -0.9 1,781,070 - SMc00953 0.68 -0.3 1,781,070 - SMc00953 0.68 -0.2 1,781,071 + SMc00953 0.68 -1.0 1,781,071 + SMc00953 0.68 -0.9 1,781,072 - SMc00953 0.68 -0.3 1,781,330 + -0.0 1,781,331 - +0.1 1,781,359 - -1.0 1,781,359 - +0.5 1,781,359 - -0.6 1,781,501 + +1.0 1,781,501 + +0.5 1,781,501 + -0.2 1,781,501 + -0.0 1,781,502 - -0.0 1,781,502 - -3.7 1,781,502 - -0.9 1,781,525 + +0.3 1,781,526 - -0.3 1,781,542 + -0.6 1,781,542 + +0.1 1,781,558 + +0.3 1,781,559 - +0.7 1,781,559 - -0.0 1,781,685 + +0.5 1,781,686 - +0.3 1,781,740 + +0.5 1,781,740 + -0.1 1,781,740 + -0.9 1,781,740 + +0.5 1,781,740 + +0.1 1,781,741 - +0.3 1,781,741 - +0.7 1,781,754 + +1.1 1,781,754 + +0.4 1,781,755 - -1.1 1,781,755 - -0.2 1,781,769 + +0.2 1,781,865 + +0.1 1,781,866 - -0.2 1,781,866 - -0.0 1,781,866 - +0.9 1,781,866 - -0.1 1,781,879 + +0.2 1,781,879 + -1.5 1,781,879 + -0.6 1,781,880 - -0.5 1,781,880 - +0.3 1,782,033 - +0.1 1,782,033 - +0.2 1,782,152 + SMc00954 0.12 +0.4 1,782,152 + SMc00954 0.12 -0.3 1,782,203 + SMc00954 0.14 -0.5 1,782,203 + SMc00954 0.14 -0.1 1,782,204 - SMc00954 0.14 -0.3 1,782,206 + SMc00954 0.14 -0.4 1,782,206 + SMc00954 0.14 -0.3 1,782,206 + SMc00954 0.14 -0.9 1,782,207 - SMc00954 0.14 -0.0 1,782,278 + SMc00954 0.18 -0.6 1,782,280 + SMc00954 0.18 -0.3 1,782,280 + SMc00954 0.18 -0.7 1,782,280 + SMc00954 0.18 +0.3 1,782,280 + SMc00954 0.18 -0.0 1,782,281 - SMc00954 0.18 +0.3 1,782,281 - SMc00954 0.18 -0.5 1,782,281 - SMc00954 0.18 +0.4 1,782,317 + SMc00954 0.19 +0.7 1,782,323 + SMc00954 0.20 +0.5
Or see this region's nucleotide sequence