Strain Fitness in Sinorhizobium meliloti 1021 around SMa2281

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2279 and SMa2281 overlap by 4 nucleotidesSMa2281 and SMa2285 are separated by 607 nucleotides SMa2279: SMa2279 - hypothetical protein, at 1,269,911 to 1,270,393 SMa2279 SMa2281: SMa2281 - hypothetical protein, at 1,270,390 to 1,270,722 SMa2281 SMa2285: SMa2285 - hypothetical protein, at 1,271,330 to 1,271,806 SMa2285 Position (kb) 1270 1271Strain fitness (log2 ratio) -1 0 1 2 3at 1269.451 kb on + strandat 1269.451 kb on + strandat 1269.451 kb on + strandat 1269.451 kb on + strandat 1269.451 kb on + strandat 1269.451 kb on + strandat 1269.452 kb on - strandat 1269.452 kb on - strandat 1269.590 kb on - strandat 1269.667 kb on + strandat 1269.667 kb on + strandat 1269.667 kb on + strandat 1269.667 kb on + strandat 1269.667 kb on + strandat 1269.668 kb on - strandat 1269.668 kb on - strandat 1269.668 kb on - strandat 1269.668 kb on - strandat 1269.668 kb on - strandat 1269.779 kb on - strandat 1269.799 kb on - strandat 1269.872 kb on - strandat 1269.912 kb on + strandat 1269.913 kb on - strandat 1269.913 kb on - strandat 1269.913 kb on - strandat 1270.109 kb on - strand, within SMa2279at 1270.146 kb on + strand, within SMa2279at 1270.147 kb on - strand, within SMa2279at 1270.147 kb on - strand, within SMa2279at 1270.147 kb on - strand, within SMa2279at 1270.164 kb on - strand, within SMa2279at 1270.179 kb on + strand, within SMa2279at 1270.179 kb on + strand, within SMa2279at 1270.180 kb on - strand, within SMa2279at 1270.242 kb on + strand, within SMa2279at 1270.243 kb on - strand, within SMa2279at 1270.257 kb on + strand, within SMa2279at 1270.298 kb on + strand, within SMa2279at 1270.322 kb on + strand, within SMa2279at 1270.350 kb on - strandat 1270.406 kb on + strandat 1270.634 kb on + strand, within SMa2281at 1270.635 kb on - strand, within SMa2281at 1270.635 kb on - strand, within SMa2281at 1270.816 kb on - strandat 1270.851 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.928 kb on - strandat 1270.952 kb on + strandat 1270.952 kb on + strandat 1270.953 kb on - strandat 1271.027 kb on + strandat 1271.124 kb on + strandat 1271.487 kb on + strand, within SMa2285at 1271.487 kb on + strand, within SMa2285at 1271.610 kb on + strand, within SMa2285at 1271.610 kb on + strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.637 kb on + strand, within SMa2285at 1271.637 kb on + strand, within SMa2285at 1271.638 kb on - strand, within SMa2285at 1271.638 kb on - strand, within SMa2285at 1271.666 kb on - strand, within SMa2285

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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1,269,451 + -0.4
1,269,451 + -0.2
1,269,451 + +0.4
1,269,451 + -0.8
1,269,451 + +0.3
1,269,451 + -0.9
1,269,452 - -0.1
1,269,452 - +0.3
1,269,590 - +0.4
1,269,667 + +0.3
1,269,667 + -0.2
1,269,667 + -1.1
1,269,667 + +0.4
1,269,667 + +0.5
1,269,668 - -1.7
1,269,668 - +0.6
1,269,668 - +1.3
1,269,668 - +0.8
1,269,668 - +0.1
1,269,779 - -0.4
1,269,799 - -0.1
1,269,872 - -0.7
1,269,912 + +0.3
1,269,913 - +0.2
1,269,913 - +0.4
1,269,913 - +0.2
1,270,109 - SMa2279 0.41 +0.3
1,270,146 + SMa2279 0.49 +0.3
1,270,147 - SMa2279 0.49 -0.1
1,270,147 - SMa2279 0.49 -0.1
1,270,147 - SMa2279 0.49 +0.1
1,270,164 - SMa2279 0.52 -0.5
1,270,179 + SMa2279 0.55 -0.5
1,270,179 + SMa2279 0.55 -0.6
1,270,180 - SMa2279 0.56 +0.2
1,270,242 + SMa2279 0.69 -1.1
1,270,243 - SMa2279 0.69 -0.2
1,270,257 + SMa2279 0.72 -0.8
1,270,298 + SMa2279 0.80 -0.6
1,270,322 + SMa2279 0.85 +0.6
1,270,350 - +0.1
1,270,406 + +0.8
1,270,634 + SMa2281 0.73 +0.2
1,270,635 - SMa2281 0.74 +0.4
1,270,635 - SMa2281 0.74 +0.7
1,270,816 - -1.7
1,270,851 - +0.3
1,270,928 - -1.0
1,270,928 - +0.1
1,270,928 - +0.5
1,270,928 - -0.5
1,270,928 - +0.2
1,270,952 + +0.5
1,270,952 + -0.7
1,270,953 - -0.1
1,271,027 + +1.0
1,271,124 + -0.6
1,271,487 + SMa2285 0.33 -0.0
1,271,487 + SMa2285 0.33 +0.3
1,271,610 + SMa2285 0.59 +0.0
1,271,610 + SMa2285 0.59 +0.0
1,271,611 - SMa2285 0.59 +0.0
1,271,611 - SMa2285 0.59 +0.2
1,271,611 - SMa2285 0.59 +0.4
1,271,611 - SMa2285 0.59 +0.4
1,271,637 + SMa2285 0.64 +0.6
1,271,637 + SMa2285 0.64 -0.0
1,271,638 - SMa2285 0.65 +3.4
1,271,638 - SMa2285 0.65 +0.5
1,271,666 - SMa2285 0.70 +1.5

Or see this region's nucleotide sequence