Strain Fitness in Sinorhizobium meliloti 1021 around SMa1896

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1893 and SMa1894 are separated by 109 nucleotidesSMa1894 and SMa1896 are separated by 0 nucleotidesSMa1896 and SMa1898 are separated by 205 nucleotides SMa1893: SMa1893 - LysR family transcriptional regulator, at 1,075,895 to 1,076,770 SMa1893 SMa1894: SMa1894 - methionine sulfoxide reductase B, at 1,076,880 to 1,077,323 SMa1894 SMa1896: SMa1896 - methionine sulfoxide reductase A, at 1,077,324 to 1,077,830 SMa1896 SMa1898: SMa1898 - hypothetical protein, at 1,078,036 to 1,079,262 SMa1898 Position (kb) 1077 1078Strain fitness (log2 ratio) -2 -1 0 1 2at 1076.326 kb on + strand, within SMa1893at 1076.327 kb on - strand, within SMa1893at 1076.327 kb on - strand, within SMa1893at 1076.327 kb on - strand, within SMa1893at 1076.463 kb on - strand, within SMa1893at 1076.469 kb on - strand, within SMa1893at 1076.659 kb on - strand, within SMa1893at 1076.802 kb on + strandat 1076.802 kb on + strandat 1076.803 kb on - strandat 1076.803 kb on - strandat 1076.803 kb on - strandat 1076.803 kb on - strandat 1076.887 kb on - strandat 1076.918 kb on + strandat 1076.919 kb on - strandat 1076.980 kb on - strand, within SMa1894at 1077.006 kb on + strand, within SMa1894at 1077.006 kb on + strand, within SMa1894at 1077.228 kb on + strand, within SMa1894at 1077.228 kb on + strand, within SMa1894at 1077.288 kb on + strandat 1077.417 kb on + strand, within SMa1896at 1077.447 kb on + strand, within SMa1896at 1077.591 kb on + strand, within SMa1896at 1077.591 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.607 kb on - strand, within SMa1896at 1077.748 kb on - strand, within SMa1896at 1077.748 kb on - strand, within SMa1896at 1077.772 kb on - strand, within SMa1896at 1077.805 kb on + strandat 1077.853 kb on + strandat 1077.854 kb on - strandat 1077.943 kb on + strandat 1077.943 kb on + strandat 1078.003 kb on + strandat 1078.008 kb on + strandat 1078.009 kb on - strandat 1078.047 kb on + strandat 1078.319 kb on - strand, within SMa1898at 1078.333 kb on + strand, within SMa1898at 1078.421 kb on + strand, within SMa1898at 1078.539 kb on + strand, within SMa1898at 1078.641 kb on + strand, within SMa1898at 1078.789 kb on + strand, within SMa1898at 1078.790 kb on - strand, within SMa1898

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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1,076,326 + SMa1893 0.49 +1.0
1,076,327 - SMa1893 0.49 +1.8
1,076,327 - SMa1893 0.49 -0.9
1,076,327 - SMa1893 0.49 +1.3
1,076,463 - SMa1893 0.65 +0.1
1,076,469 - SMa1893 0.66 +0.3
1,076,659 - SMa1893 0.87 +0.5
1,076,802 + -0.2
1,076,802 + -0.1
1,076,803 - -0.0
1,076,803 - -0.1
1,076,803 - +0.4
1,076,803 - +0.8
1,076,887 - -0.8
1,076,918 + +0.6
1,076,919 - -0.2
1,076,980 - SMa1894 0.23 -0.3
1,077,006 + SMa1894 0.28 -0.4
1,077,006 + SMa1894 0.28 +0.8
1,077,228 + SMa1894 0.78 +0.0
1,077,228 + SMa1894 0.78 -0.4
1,077,288 + +1.2
1,077,417 + SMa1896 0.18 -0.4
1,077,447 + SMa1896 0.24 +0.8
1,077,591 + SMa1896 0.53 -0.0
1,077,591 + SMa1896 0.53 +0.7
1,077,606 + SMa1896 0.56 +0.5
1,077,606 + SMa1896 0.56 +0.1
1,077,606 + SMa1896 0.56 +0.3
1,077,606 + SMa1896 0.56 +0.1
1,077,607 - SMa1896 0.56 +0.7
1,077,748 - SMa1896 0.84 +2.2
1,077,748 - SMa1896 0.84 +0.0
1,077,772 - SMa1896 0.88 -0.0
1,077,805 + +0.2
1,077,853 + +1.4
1,077,854 - -0.2
1,077,943 + -1.0
1,077,943 + +1.0
1,078,003 + +0.0
1,078,008 + -2.3
1,078,009 - -0.0
1,078,047 + +0.8
1,078,319 - SMa1898 0.23 -0.5
1,078,333 + SMa1898 0.24 -0.4
1,078,421 + SMa1898 0.31 +0.7
1,078,539 + SMa1898 0.41 -1.6
1,078,641 + SMa1898 0.49 +0.8
1,078,789 + SMa1898 0.61 +0.2
1,078,790 - SMa1898 0.61 +1.8

Or see this region's nucleotide sequence