Strain Fitness in Sinorhizobium meliloti 1021 around SMa0787

Experiment: 6-Pentyl-2H-pyran-2-one 0.4557668333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0785 and SMa0787 overlap by 39 nucleotidesSMa0787 and SMa0789 are separated by 383 nucleotides SMa0785: SMa0785 - Recombinase, at 426,193 to 428,277 SMa0785 SMa0787: SMa0787 - transposase, fragment, at 428,239 to 429,057 SMa0787 SMa0789: SMa0789 - GntR family transcriptional regulator, at 429,441 to 430,136 SMa0789 Position (kb) 428 429 430Strain fitness (log2 ratio) -2 -1 0 1 2at 428.333 kb on + strand, within SMa0787at 428.708 kb on + strand, within SMa0787at 428.738 kb on + strand, within SMa0787at 428.739 kb on - strand, within SMa0787at 428.766 kb on + strand, within SMa0787at 429.165 kb on - strandat 429.275 kb on + strandat 429.276 kb on - strandat 429.334 kb on + strandat 429.407 kb on + strandat 429.408 kb on - strandat 429.408 kb on - strandat 429.425 kb on + strandat 429.530 kb on + strand, within SMa0789at 429.535 kb on + strand, within SMa0789at 429.828 kb on + strand, within SMa0789at 429.828 kb on + strand, within SMa0789at 429.829 kb on - strand, within SMa0789at 429.891 kb on - strand, within SMa0789at 429.977 kb on + strand, within SMa0789

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.4557668333 mM
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428,333 + SMa0787 0.11 +1.0
428,708 + SMa0787 0.57 -0.5
428,738 + SMa0787 0.61 +0.2
428,739 - SMa0787 0.61 +0.7
428,766 + SMa0787 0.64 +1.4
429,165 - +0.1
429,275 + +0.3
429,276 - -1.1
429,334 + +0.4
429,407 + +0.3
429,408 - +0.2
429,408 - +0.8
429,425 + +0.4
429,530 + SMa0789 0.13 -0.2
429,535 + SMa0789 0.14 -2.1
429,828 + SMa0789 0.56 +0.2
429,828 + SMa0789 0.56 +0.8
429,829 - SMa0789 0.56 +1.8
429,891 - SMa0789 0.65 +1.8
429,977 + SMa0789 0.77 +0.1

Or see this region's nucleotide sequence