Strain Fitness in Sinorhizobium meliloti 1021 around SMc03899

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03948 and SMc03898 overlap by 4 nucleotidesSMc03898 and SMc03899 are separated by 24 nucleotidesSMc03899 and SMc03900 are separated by 286 nucleotides SMc03948: SMc03948 - transposase ISRM1, at 3,566,939 to 3,567,769 SMc03948 SMc03898: SMc03898 - transposase ISRM1, at 3,567,766 to 3,568,158 SMc03898 SMc03899: SMc03899 - hypothetical protein, at 3,568,183 to 3,568,434 SMc03899 SMc03900: SMc03900 - cyclic beta-1,2-glucan ABc transporter, at 3,568,721 to 3,570,571 SMc03900 Position (kb) 3568 3569Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3568.323 kb on - strand, within SMc03899at 3568.426 kb on - strandat 3568.587 kb on - strandat 3568.592 kb on - strandat 3568.592 kb on - strandat 3568.625 kb on - strandat 3568.832 kb on + strandat 3568.832 kb on + strandat 3568.832 kb on + strandat 3568.832 kb on + strandat 3568.832 kb on + strandat 3568.832 kb on + strandat 3568.833 kb on - strandat 3568.833 kb on - strandat 3568.833 kb on - strandat 3568.833 kb on - strandat 3568.833 kb on - strandat 3568.833 kb on - strandat 3568.833 kb on - strandat 3568.850 kb on + strandat 3568.851 kb on - strandat 3568.891 kb on - strandat 3569.020 kb on + strand, within SMc03900at 3569.020 kb on + strand, within SMc03900at 3569.021 kb on - strand, within SMc03900at 3569.021 kb on - strand, within SMc03900at 3569.021 kb on - strand, within SMc03900at 3569.164 kb on + strand, within SMc03900at 3569.164 kb on + strand, within SMc03900at 3569.164 kb on + strand, within SMc03900at 3569.165 kb on - strand, within SMc03900at 3569.165 kb on - strand, within SMc03900at 3569.318 kb on + strand, within SMc03900at 3569.318 kb on + strand, within SMc03900at 3569.318 kb on + strand, within SMc03900at 3569.318 kb on + strand, within SMc03900at 3569.318 kb on + strand, within SMc03900at 3569.318 kb on + strand, within SMc03900at 3569.318 kb on + strandat 3569.318 kb on + strand, within SMc03900at 3569.319 kb on - strand, within SMc03900at 3569.319 kb on - strand, within SMc03900at 3569.319 kb on - strand, within SMc03900at 3569.319 kb on - strand, within SMc03900at 3569.384 kb on + strand, within SMc03900at 3569.384 kb on + strand, within SMc03900at 3569.384 kb on + strand, within SMc03900at 3569.384 kb on + strand, within SMc03900at 3569.384 kb on + strand, within SMc03900at 3569.430 kb on - strand, within SMc03900

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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3,568,323 - SMc03899 0.56 -1.3
3,568,426 - -0.6
3,568,587 - -2.4
3,568,592 - -0.2
3,568,592 - -1.6
3,568,625 - +1.3
3,568,832 + +1.0
3,568,832 + +0.0
3,568,832 + +0.0
3,568,832 + -0.3
3,568,832 + +2.0
3,568,832 + +1.3
3,568,833 - -2.3
3,568,833 - -1.4
3,568,833 - -1.8
3,568,833 - +0.4
3,568,833 - -0.6
3,568,833 - -1.4
3,568,833 - -2.5
3,568,850 + -1.4
3,568,851 - +2.0
3,568,891 - +1.0
3,569,020 + SMc03900 0.16 +0.4
3,569,020 + SMc03900 0.16 -0.6
3,569,021 - SMc03900 0.16 -2.1
3,569,021 - SMc03900 0.16 +1.0
3,569,021 - SMc03900 0.16 +2.0
3,569,164 + SMc03900 0.24 +0.4
3,569,164 + SMc03900 0.24 -1.2
3,569,164 + SMc03900 0.24 +2.0
3,569,165 - SMc03900 0.24 -1.6
3,569,165 - SMc03900 0.24 +2.0
3,569,318 + SMc03900 0.32 -3.5
3,569,318 + SMc03900 0.32 -2.9
3,569,318 + SMc03900 0.32 -0.5
3,569,318 + SMc03900 0.32 -1.0
3,569,318 + SMc03900 0.32 -1.9
3,569,318 + SMc03900 0.32 -1.3
3,569,318 + +2.0
3,569,318 + SMc03900 0.32 +2.0
3,569,319 - SMc03900 0.32 -2.6
3,569,319 - SMc03900 0.32 +1.0
3,569,319 - SMc03900 0.32 -2.9
3,569,319 - SMc03900 0.32 +0.4
3,569,384 + SMc03900 0.36 -0.8
3,569,384 + SMc03900 0.36 -0.3
3,569,384 + SMc03900 0.36 +2.0
3,569,384 + SMc03900 0.36 -3.4
3,569,384 + SMc03900 0.36 +2.0
3,569,430 - SMc03900 0.38 -0.3

Or see this region's nucleotide sequence