Strain Fitness in Sinorhizobium meliloti 1021 around SMc02297

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02296 and SMc02297 are separated by 109 nucleotidesSMc02297 and SMc02298 are separated by 121 nucleotidesSMc02298 and SMc02329 overlap by 4 nucleotides SMc02296: SMc02296 - modification enzyme transmembrane protein, at 669,078 to 670,658 SMc02296 SMc02297: SMc02297 - integrase/resolvase recombinase, at 670,768 to 672,309 SMc02297 SMc02298: SMc02298 - transposase ISRM1, at 672,431 to 672,823 SMc02298 SMc02329: SMc02329 - transposase ISRM1, at 672,820 to 673,512 SMc02329 Position (kb) 670 671 672 673Strain fitness (log2 ratio) -2 -1 0 1 2 3at 669.798 kb on + strand, within SMc02296at 669.798 kb on + strand, within SMc02296at 669.799 kb on - strand, within SMc02296at 669.904 kb on + strand, within SMc02296at 669.997 kb on + strand, within SMc02296at 669.998 kb on - strand, within SMc02296at 669.998 kb on - strand, within SMc02296at 669.998 kb on - strand, within SMc02296at 670.105 kb on + strand, within SMc02296at 670.153 kb on + strand, within SMc02296at 670.153 kb on + strand, within SMc02296at 670.211 kb on - strand, within SMc02296at 670.211 kb on - strand, within SMc02296at 670.211 kb on - strand, within SMc02296at 670.297 kb on + strand, within SMc02296at 670.298 kb on - strand, within SMc02296at 670.298 kb on - strand, within SMc02296at 670.405 kb on + strand, within SMc02296at 670.406 kb on - strand, within SMc02296at 670.429 kb on - strand, within SMc02296at 670.429 kb on - strand, within SMc02296at 670.453 kb on + strand, within SMc02296at 670.453 kb on + strand, within SMc02296at 670.570 kb on + strandat 670.570 kb on + strandat 670.571 kb on - strandat 670.662 kb on + strandat 670.663 kb on - strandat 670.668 kb on - strandat 670.744 kb on + strandat 670.745 kb on - strandat 670.747 kb on + strandat 670.770 kb on - strandat 670.864 kb on + strandat 670.864 kb on + strandat 670.864 kb on + strandat 670.864 kb on + strandat 670.865 kb on - strandat 670.921 kb on + strandat 670.922 kb on - strandat 670.946 kb on - strand, within SMc02297at 671.014 kb on - strand, within SMc02297at 671.054 kb on + strand, within SMc02297at 671.066 kb on + strand, within SMc02297at 671.067 kb on - strand, within SMc02297at 671.182 kb on - strand, within SMc02297at 671.182 kb on - strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.244 kb on - strand, within SMc02297at 671.244 kb on - strand, within SMc02297at 671.244 kb on - strand, within SMc02297at 671.248 kb on + strand, within SMc02297at 671.248 kb on + strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.250 kb on + strand, within SMc02297at 671.250 kb on + strand, within SMc02297at 671.251 kb on - strand, within SMc02297at 671.251 kb on - strand, within SMc02297at 671.251 kb on - strand, within SMc02297at 671.317 kb on + strand, within SMc02297at 671.408 kb on + strand, within SMc02297at 671.409 kb on - strand, within SMc02297at 671.434 kb on + strand, within SMc02297at 671.528 kb on + strand, within SMc02297at 671.529 kb on - strand, within SMc02297at 671.529 kb on - strand, within SMc02297at 671.529 kb on - strand, within SMc02297at 671.611 kb on + strand, within SMc02297at 671.611 kb on + strand, within SMc02297at 671.611 kb on + strand, within SMc02297at 671.611 kb on + strand, within SMc02297at 671.732 kb on + strand, within SMc02297at 671.732 kb on + strand, within SMc02297at 671.842 kb on + strand, within SMc02297at 671.877 kb on + strand, within SMc02297at 671.878 kb on - strand, within SMc02297at 671.880 kb on + strand, within SMc02297at 671.880 kb on + strand, within SMc02297at 671.881 kb on - strand, within SMc02297at 671.881 kb on - strand, within SMc02297at 671.974 kb on - strand, within SMc02297at 672.045 kb on + strand, within SMc02297at 672.045 kb on + strand, within SMc02297at 672.045 kb on + strand, within SMc02297at 672.045 kb on + strand, within SMc02297at 672.045 kb on + strand, within SMc02297at 672.046 kb on - strand, within SMc02297at 672.046 kb on - strand, within SMc02297at 672.046 kb on - strand, within SMc02297at 672.046 kb on - strand, within SMc02297at 672.046 kb on - strand, within SMc02297at 672.123 kb on + strand, within SMc02297at 672.124 kb on - strand, within SMc02297at 672.143 kb on + strand, within SMc02297at 672.143 kb on + strand, within SMc02297at 672.144 kb on - strand, within SMc02297at 672.212 kb on + strandat 672.212 kb on + strandat 672.213 kb on - strandat 672.213 kb on - strandat 672.215 kb on + strandat 672.215 kb on + strandat 672.215 kb on + strandat 672.215 kb on + strandat 672.216 kb on - strandat 672.216 kb on - strandat 672.351 kb on - strandat 672.367 kb on - strandat 672.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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669,798 + SMc02296 0.46 -0.3
669,798 + SMc02296 0.46 -0.6
669,799 - SMc02296 0.46 -0.4
669,904 + SMc02296 0.52 +0.7
669,997 + SMc02296 0.58 -0.7
669,998 - SMc02296 0.58 +0.2
669,998 - SMc02296 0.58 +0.6
669,998 - SMc02296 0.58 -0.8
670,105 + SMc02296 0.65 +0.8
670,153 + SMc02296 0.68 -0.6
670,153 + SMc02296 0.68 -0.3
670,211 - SMc02296 0.72 -0.6
670,211 - SMc02296 0.72 -1.4
670,211 - SMc02296 0.72 -1.7
670,297 + SMc02296 0.77 -0.1
670,298 - SMc02296 0.77 -0.5
670,298 - SMc02296 0.77 +0.6
670,405 + SMc02296 0.84 +0.5
670,406 - SMc02296 0.84 -2.6
670,429 - SMc02296 0.85 -0.1
670,429 - SMc02296 0.85 -1.8
670,453 + SMc02296 0.87 -0.3
670,453 + SMc02296 0.87 -0.2
670,570 + -0.8
670,570 + -0.3
670,571 - -1.0
670,662 + +3.0
670,663 - -0.5
670,668 - -0.3
670,744 + -0.4
670,745 - +1.0
670,747 + -0.7
670,770 - +0.2
670,864 + -0.8
670,864 + +1.0
670,864 + -0.2
670,864 + -0.4
670,865 - -0.0
670,921 + -0.5
670,922 - -0.2
670,946 - SMc02297 0.12 -0.1
671,014 - SMc02297 0.16 -0.5
671,054 + SMc02297 0.19 -0.2
671,066 + SMc02297 0.19 +0.7
671,067 - SMc02297 0.19 -0.5
671,182 - SMc02297 0.27 -0.1
671,182 - SMc02297 0.27 -2.0
671,243 + SMc02297 0.31 -0.5
671,243 + SMc02297 0.31 +0.5
671,243 + SMc02297 0.31 -0.4
671,243 + SMc02297 0.31 -1.3
671,244 - SMc02297 0.31 -0.3
671,244 - SMc02297 0.31 -1.3
671,244 - SMc02297 0.31 +0.8
671,248 + SMc02297 0.31 +0.1
671,248 + SMc02297 0.31 +0.9
671,249 - SMc02297 0.31 +0.4
671,249 - SMc02297 0.31 -0.7
671,249 - SMc02297 0.31 -0.9
671,249 - SMc02297 0.31 -0.3
671,250 + SMc02297 0.31 -1.3
671,250 + SMc02297 0.31 -0.6
671,251 - SMc02297 0.31 +0.7
671,251 - SMc02297 0.31 -0.6
671,251 - SMc02297 0.31 -1.3
671,317 + SMc02297 0.36 -0.6
671,408 + SMc02297 0.42 -0.3
671,409 - SMc02297 0.42 +0.1
671,434 + SMc02297 0.43 -0.7
671,528 + SMc02297 0.49 -0.6
671,529 - SMc02297 0.49 +0.0
671,529 - SMc02297 0.49 +0.0
671,529 - SMc02297 0.49 +1.4
671,611 + SMc02297 0.55 -0.6
671,611 + SMc02297 0.55 +1.0
671,611 + SMc02297 0.55 +0.1
671,611 + SMc02297 0.55 -0.2
671,732 + SMc02297 0.63 +0.3
671,732 + SMc02297 0.63 -0.4
671,842 + SMc02297 0.70 +0.1
671,877 + SMc02297 0.72 +0.1
671,878 - SMc02297 0.72 -0.1
671,880 + SMc02297 0.72 -0.2
671,880 + SMc02297 0.72 +1.3
671,881 - SMc02297 0.72 -0.6
671,881 - SMc02297 0.72 -0.3
671,974 - SMc02297 0.78 -0.6
672,045 + SMc02297 0.83 +0.6
672,045 + SMc02297 0.83 -0.4
672,045 + SMc02297 0.83 -0.0
672,045 + SMc02297 0.83 +0.4
672,045 + SMc02297 0.83 -0.6
672,046 - SMc02297 0.83 -0.4
672,046 - SMc02297 0.83 +0.1
672,046 - SMc02297 0.83 -1.1
672,046 - SMc02297 0.83 +0.5
672,046 - SMc02297 0.83 -0.6
672,123 + SMc02297 0.88 -0.7
672,124 - SMc02297 0.88 -0.1
672,143 + SMc02297 0.89 +0.2
672,143 + SMc02297 0.89 +1.0
672,144 - SMc02297 0.89 -0.7
672,212 + -1.0
672,212 + +0.0
672,213 - -0.1
672,213 - -0.4
672,215 + +1.4
672,215 + -0.3
672,215 + -0.5
672,215 + -0.5
672,216 - -0.3
672,216 - +0.7
672,351 - +0.0
672,367 - +0.3
672,367 - -1.2

Or see this region's nucleotide sequence