Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1595 and SMa1597 are separated by 449 nucleotides SMa1597 and SMa1600 are separated by 128 nucleotides
SMa1595: SMa1595 - hypothetical protein, at 890,034 to 890,477
SMa1595
SMa1597: SMa1597 - Pilus assembly chaperone, at 890,927 to 891,709
SMa1597
SMa1600: SMa1600 - Potassium efflux protein, at 891,838 to 893,592
SMa1600
Position (kb) 890
891
892 Strain fitness (log2 ratio) -1
0
1
2 at 889.930 kb on - strand at 889.992 kb on + strand at 889.993 kb on - strand at 889.993 kb on - strand at 890.119 kb on + strand, within SMa1595 at 890.120 kb on - strand, within SMa1595 at 890.189 kb on - strand, within SMa1595 at 890.502 kb on - strand at 890.558 kb on - strand at 890.558 kb on - strand at 890.594 kb on + strand at 890.595 kb on - strand at 890.614 kb on + strand at 890.615 kb on - strand at 890.660 kb on - strand at 890.660 kb on - strand at 890.764 kb on - strand at 890.915 kb on + strand at 890.916 kb on - strand at 890.916 kb on - strand at 890.916 kb on - strand at 890.929 kb on - strand at 891.006 kb on + strand, within SMa1597 at 891.057 kb on + strand, within SMa1597 at 891.058 kb on - strand, within SMa1597 at 891.160 kb on + strand, within SMa1597 at 891.594 kb on + strand, within SMa1597 at 891.600 kb on - strand, within SMa1597 at 891.600 kb on - strand, within SMa1597 at 891.735 kb on + strand at 891.737 kb on + strand at 891.737 kb on + strand at 891.737 kb on + strand at 891.786 kb on + strand at 892.050 kb on - strand, within SMa1600 at 892.050 kb on - strand, within SMa1600 at 892.055 kb on + strand at 892.076 kb on + strand, within SMa1600 at 892.278 kb on + strand, within SMa1600 at 892.278 kb on + strand, within SMa1600 at 892.279 kb on - strand, within SMa1600 at 892.279 kb on - strand, within SMa1600 at 892.331 kb on + strand, within SMa1600 at 892.423 kb on - strand, within SMa1600 at 892.447 kb on - strand, within SMa1600 at 892.522 kb on + strand at 892.522 kb on + strand, within SMa1600 at 892.526 kb on + strand, within SMa1600 at 892.527 kb on - strand, within SMa1600 at 892.527 kb on - strand, within SMa1600 at 892.527 kb on - strand, within SMa1600
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 889,930 - -0.8 889,992 + +0.4 889,993 - +0.3 889,993 - -0.6 890,119 + SMa1595 0.19 -0.8 890,120 - SMa1595 0.19 -0.8 890,189 - SMa1595 0.35 -0.9 890,502 - +0.0 890,558 - -0.5 890,558 - -0.1 890,594 + +0.5 890,595 - -0.2 890,614 + -1.0 890,615 - +1.3 890,660 - +0.0 890,660 - +1.7 890,764 - +0.0 890,915 + -0.3 890,916 - +0.2 890,916 - +0.8 890,916 - +0.0 890,929 - -0.6 891,006 + SMa1597 0.10 -0.6 891,057 + SMa1597 0.17 +0.1 891,058 - SMa1597 0.17 +0.2 891,160 + SMa1597 0.30 -1.0 891,594 + SMa1597 0.85 +1.0 891,600 - SMa1597 0.86 +1.3 891,600 - SMa1597 0.86 +1.2 891,735 + +0.1 891,737 + +0.4 891,737 + -0.2 891,737 + -0.5 891,786 + -0.5 892,050 - SMa1600 0.12 -0.4 892,050 - SMa1600 0.12 -1.3 892,055 + +1.0 892,076 + SMa1600 0.14 +0.0 892,278 + SMa1600 0.25 +0.0 892,278 + SMa1600 0.25 -0.4 892,279 - SMa1600 0.25 -0.4 892,279 - SMa1600 0.25 -0.6 892,331 + SMa1600 0.28 -0.3 892,423 - SMa1600 0.33 -0.6 892,447 - SMa1600 0.35 +0.7 892,522 + +2.4 892,522 + SMa1600 0.39 -1.1 892,526 + SMa1600 0.39 -0.1 892,527 - SMa1600 0.39 -0.7 892,527 - SMa1600 0.39 +0.7 892,527 - SMa1600 0.39 +0.6
Or see this region's nucleotide sequence