Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02328 and SMc02286 are separated by 222 nucleotides SMc02286 and SMc02287 are separated by 80 nucleotides SMc02287 and SMc02289 are separated by 913 nucleotides
SMc02328: SMc02328 - hypothetical protein, at 660,620 to 661,264
SMc02328
SMc02286: SMc02286 - hypothetical protein, at 661,487 to 661,735
SMc02286
SMc02287: SMc02287 - DNA-invertase, at 661,816 to 662,370
SMc02287
SMc02289: SMc02289 - transposase ISRM11/ISRM2011-2, at 663,284 to 663,889
SMc02289
Position (kb) 661
662
663 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 661.046 kb on - strand, within SMc02328 at 661.046 kb on - strand, within SMc02328 at 661.076 kb on - strand, within SMc02328 at 661.076 kb on - strand, within SMc02328 at 661.104 kb on + strand, within SMc02328 at 661.257 kb on + strand at 661.258 kb on - strand at 661.258 kb on - strand at 661.396 kb on + strand at 661.396 kb on + strand at 661.396 kb on + strand at 661.409 kb on + strand at 661.409 kb on + strand at 661.475 kb on + strand at 661.476 kb on - strand at 661.476 kb on - strand at 661.476 kb on - strand at 661.476 kb on - strand at 661.489 kb on - strand at 661.489 kb on - strand at 661.489 kb on - strand at 661.495 kb on + strand at 661.495 kb on + strand at 661.501 kb on + strand at 661.501 kb on + strand at 661.582 kb on - strand, within SMc02286 at 661.582 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.794 kb on + strand at 661.794 kb on + strand at 661.794 kb on + strand at 662.050 kb on - strand, within SMc02287 at 662.104 kb on + strand, within SMc02287 at 662.105 kb on - strand, within SMc02287 at 662.347 kb on - strand at 662.409 kb on + strand at 662.501 kb on + strand at 662.502 kb on - strand at 662.502 kb on - strand at 662.542 kb on + strand at 662.544 kb on + strand at 662.545 kb on - strand at 662.552 kb on - strand at 662.601 kb on + strand at 662.601 kb on + strand at 662.602 kb on - strand at 662.602 kb on - strand at 662.602 kb on - strand at 662.656 kb on + strand at 662.656 kb on + strand at 662.656 kb on + strand at 662.657 kb on - strand at 662.659 kb on + strand at 662.659 kb on + strand at 662.659 kb on + strand at 662.659 kb on + strand at 662.659 kb on + strand at 662.659 kb on + strand at 662.660 kb on - strand at 662.660 kb on - strand at 662.662 kb on + strand at 662.663 kb on - strand at 662.858 kb on + strand at 662.942 kb on + strand at 662.942 kb on + strand at 662.942 kb on + strand at 662.975 kb on + strand at 663.010 kb on + strand at 663.010 kb on + strand at 663.010 kb on + strand at 663.010 kb on + strand at 663.010 kb on + strand at 663.011 kb on - strand at 663.011 kb on - strand at 663.011 kb on - strand at 663.011 kb on - strand at 663.014 kb on - strand at 663.045 kb on - strand at 663.068 kb on - strand at 663.068 kb on - strand at 663.097 kb on + strand at 663.097 kb on + strand at 663.098 kb on - strand at 663.098 kb on - strand at 663.098 kb on - strand at 663.098 kb on - strand at 663.135 kb on - strand at 663.153 kb on + strand at 663.153 kb on + strand at 663.154 kb on - strand at 663.278 kb on - strand at 663.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 661,046 - SMc02328 0.66 +0.5 661,046 - SMc02328 0.66 +0.5 661,076 - SMc02328 0.71 +0.8 661,076 - SMc02328 0.71 -0.3 661,104 + SMc02328 0.75 +0.1 661,257 + -1.6 661,258 - +0.5 661,258 - +0.4 661,396 + -1.6 661,396 + -0.1 661,396 + +3.1 661,409 + -0.2 661,409 + -0.6 661,475 + -0.3 661,476 - -0.0 661,476 - +0.2 661,476 - +0.1 661,476 - -0.3 661,489 - +0.1 661,489 - +0.0 661,489 - -0.1 661,495 + +0.4 661,495 + +0.8 661,501 + -0.6 661,501 + -1.1 661,582 - SMc02286 0.38 +0.2 661,582 - SMc02286 0.38 +0.1 661,677 - SMc02286 0.76 +0.1 661,677 - SMc02286 0.76 -0.4 661,677 - SMc02286 0.76 -0.6 661,677 - SMc02286 0.76 -0.4 661,677 - SMc02286 0.76 -0.9 661,677 - SMc02286 0.76 -0.1 661,677 - SMc02286 0.76 +0.3 661,794 + -0.6 661,794 + -0.5 661,794 + +0.5 662,050 - SMc02287 0.42 -0.4 662,104 + SMc02287 0.52 -0.9 662,105 - SMc02287 0.52 -1.3 662,347 - -0.5 662,409 + +0.0 662,501 + +0.1 662,502 - +0.5 662,502 - +0.4 662,542 + -1.1 662,544 + -1.5 662,545 - -1.0 662,552 - -1.9 662,601 + -0.3 662,601 + -1.0 662,602 - -0.0 662,602 - -0.2 662,602 - +0.6 662,656 + -1.4 662,656 + -1.1 662,656 + -0.2 662,657 - +2.1 662,659 + +0.1 662,659 + +0.4 662,659 + -0.7 662,659 + -0.1 662,659 + +0.1 662,659 + +0.3 662,660 - -0.3 662,660 - -0.8 662,662 + -0.1 662,663 - +1.1 662,858 + +0.2 662,942 + -0.8 662,942 + -0.5 662,942 + -0.5 662,975 + -0.2 663,010 + -0.6 663,010 + -0.4 663,010 + +0.2 663,010 + -0.8 663,010 + +0.4 663,011 - -0.5 663,011 - +0.3 663,011 - -0.3 663,011 - -0.8 663,014 - +0.6 663,045 - -0.2 663,068 - -1.5 663,068 - -1.3 663,097 + -0.0 663,097 + +1.1 663,098 - +0.1 663,098 - -0.3 663,098 - -0.7 663,098 - +0.1 663,135 - -0.1 663,153 + +1.2 663,153 + +0.9 663,154 - -0.1 663,278 - +1.2 663,278 - -0.1
Or see this region's nucleotide sequence