Strain Fitness in Sinorhizobium meliloti 1021 around SMc01370

Experiment: LB no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01372 and SMc01371 are separated by 156 nucleotidesSMc01371 and SMc01370 are separated by 17 nucleotidesSMc01370 and SMc01369 are separated by 486 nucleotidesSMc01369 and SMc01368 are separated by 94 nucleotides SMc01372: SMc01372 - hypothetical protein, at 1,409,292 to 1,409,561 SMc01372 SMc01371: SMc01371 - 2-component receiver domain-containing protein, at 1,409,718 to 1,410,089 SMc01371 SMc01370: SMc01370 - response regulator PleD, at 1,410,107 to 1,411,474 SMc01370 SMc01369: SMc01369 - 50S ribosomal protein L33, at 1,411,961 to 1,412,128 SMc01369 SMc01368: SMc01368 - transport transmembrane protein, at 1,412,223 to 1,413,407 SMc01368 Position (kb) 1410 1411 1412Strain fitness (log2 ratio) -2 -1 0 1at 1409.117 kb on - strandat 1409.281 kb on - strandat 1409.565 kb on - strandat 1409.597 kb on - strandat 1409.601 kb on - strandat 1409.682 kb on + strandat 1410.106 kb on + strandat 1411.013 kb on + strand, within SMc01370at 1411.963 kb on - strandat 1412.266 kb on - strandat 1412.272 kb on + strandat 1412.454 kb on - strand, within SMc01368at 1412.456 kb on - strand, within SMc01368at 1412.456 kb on - strand, within SMc01368

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
remove
1,409,117 - -0.4
1,409,281 - -1.8
1,409,565 - -0.6
1,409,597 - -0.2
1,409,601 - +0.2
1,409,682 + -0.7
1,410,106 + -0.4
1,411,013 + SMc01370 0.66 -0.8
1,411,963 - +1.1
1,412,266 - -0.3
1,412,272 + +0.8
1,412,454 - SMc01368 0.19 +1.1
1,412,456 - SMc01368 0.20 +0.4
1,412,456 - SMc01368 0.20 +1.4

Or see this region's nucleotide sequence