Strain Fitness in Sinorhizobium meliloti 1021 around SMc01040

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04865 and SMc01038 are separated by 77 nucleotidesSMc01038 and SMc01039 overlap by 13 nucleotidesSMc01039 and SMc01040 overlap by 20 nucleotidesSMc01040 and SMc01041 are separated by 76 nucleotides SMc04865: SMc04865 - hypothetical protein, at 1,564,169 to 1,564,873 SMc04865 SMc01038: SMc01038 - hypothetical protein, at 1,564,951 to 1,565,400 SMc01038 SMc01039: SMc01039 - hypothetical protein, at 1,565,388 to 1,565,885 SMc01039 SMc01040: SMc01040 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,565,866 to 1,567,170 SMc01040 SMc01041: SMc01041 - NIFR3-like protein, at 1,567,247 to 1,568,275 SMc01041 Position (kb) 1565 1566 1567 1568Strain fitness (log2 ratio) -2 -1 0 1at 1565.287 kb on + strand, within SMc01038at 1565.389 kb on + strandat 1565.390 kb on - strandat 1565.719 kb on + strand, within SMc01039at 1565.720 kb on - strand, within SMc01039at 1565.847 kb on + strandat 1565.848 kb on - strandat 1567.128 kb on - strandat 1567.329 kb on + strandat 1567.330 kb on - strandat 1567.568 kb on - strand, within SMc01041at 1567.617 kb on - strand, within SMc01041at 1568.060 kb on + strand, within SMc01041

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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1,565,287 + SMc01038 0.75 +1.1
1,565,389 + -0.8
1,565,390 - +1.1
1,565,719 + SMc01039 0.66 -0.2
1,565,720 - SMc01039 0.67 -0.6
1,565,847 + -0.6
1,565,848 - +0.6
1,567,128 - +0.7
1,567,329 + +0.6
1,567,330 - -0.9
1,567,568 - SMc01041 0.31 +0.1
1,567,617 - SMc01041 0.36 -1.8
1,568,060 + SMc01041 0.79 -1.4

Or see this region's nucleotide sequence