Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00197 and SMc00143 are separated by 15 nucleotides SMc00143 and SMc00142 overlap by 4 nucleotides SMc00142 and SMc00141 are separated by 114 nucleotides
SMc00197: SMc00197 - hypothetical protein, at 2,025,754 to 2,026,662
SMc00197
SMc00143: SMc00143 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 2,026,678 to 2,027,334
SMc00143
SMc00142: SMc00142 - molybdopterin-guanine dinucleotide biosynthesis protein, at 2,027,331 to 2,027,855
SMc00142
SMc00141: SMc00141 - hypothetical protein, at 2,027,970 to 2,029,985
SMc00141
Position (kb)
2026
2027
2028 Strain fitness (log2 ratio)
-2
-1
0
1 at 2025.681 kb on - strand at 2025.681 kb on - strand at 2025.681 kb on - strand at 2025.681 kb on - strand at 2025.740 kb on + strand at 2025.858 kb on + strand, within SMc00197 at 2025.858 kb on + strand, within SMc00197 at 2025.859 kb on - strand, within SMc00197 at 2025.859 kb on - strand, within SMc00197 at 2025.859 kb on - strand, within SMc00197 at 2025.912 kb on - strand, within SMc00197 at 2025.912 kb on - strand, within SMc00197 at 2025.912 kb on - strand, within SMc00197 at 2025.969 kb on - strand, within SMc00197 at 2026.009 kb on + strand, within SMc00197 at 2026.009 kb on + strand, within SMc00197 at 2026.009 kb on + strand, within SMc00197 at 2026.010 kb on - strand, within SMc00197 at 2026.010 kb on - strand, within SMc00197 at 2026.010 kb on - strand, within SMc00197 at 2026.012 kb on - strand, within SMc00197 at 2026.012 kb on - strand, within SMc00197 at 2026.012 kb on - strand, within SMc00197 at 2026.012 kb on - strand, within SMc00197 at 2026.012 kb on - strand, within SMc00197 at 2026.145 kb on + strand, within SMc00197 at 2026.145 kb on + strand, within SMc00197 at 2026.169 kb on + strand, within SMc00197 at 2026.169 kb on + strand, within SMc00197 at 2026.170 kb on - strand, within SMc00197 at 2026.288 kb on + strand, within SMc00197 at 2026.288 kb on + strand, within SMc00197 at 2026.288 kb on + strand, within SMc00197 at 2026.289 kb on - strand, within SMc00197 at 2026.289 kb on - strand, within SMc00197 at 2026.436 kb on + strand, within SMc00197 at 2026.437 kb on - strand, within SMc00197 at 2026.437 kb on - strand, within SMc00197 at 2026.483 kb on + strand, within SMc00197 at 2026.484 kb on - strand, within SMc00197 at 2026.588 kb on + strand at 2026.589 kb on - strand at 2026.590 kb on + strand at 2026.590 kb on + strand at 2026.591 kb on - strand at 2026.591 kb on - strand at 2026.591 kb on - strand at 2026.591 kb on - strand at 2026.597 kb on + strand at 2026.598 kb on - strand at 2026.660 kb on + strand at 2026.661 kb on - strand at 2026.953 kb on + strand, within SMc00143 at 2027.213 kb on + strand, within SMc00143 at 2027.214 kb on - strand, within SMc00143 at 2027.311 kb on + strand at 2027.439 kb on + strand, within SMc00142 at 2027.439 kb on + strand, within SMc00142 at 2027.440 kb on - strand, within SMc00142 at 2027.441 kb on + strand, within SMc00142 at 2027.441 kb on + strand, within SMc00142 at 2027.441 kb on + strand, within SMc00142 at 2027.442 kb on - strand, within SMc00142 at 2027.506 kb on - strand, within SMc00142 at 2027.506 kb on - strand, within SMc00142 at 2027.536 kb on + strand, within SMc00142 at 2027.642 kb on - strand, within SMc00142 at 2027.642 kb on - strand, within SMc00142 at 2027.656 kb on - strand, within SMc00142 at 2027.656 kb on - strand, within SMc00142 at 2027.739 kb on - strand, within SMc00142 at 2027.739 kb on - strand, within SMc00142 at 2027.789 kb on - strand, within SMc00142 at 2027.906 kb on - strand at 2027.906 kb on - strand at 2027.918 kb on + strand at 2027.972 kb on - strand at 2027.982 kb on + strand at 2027.983 kb on - strand at 2027.983 kb on - strand at 2028.113 kb on - strand at 2028.294 kb on + strand, within SMc00141 at 2028.294 kb on + strand, within SMc00141 at 2028.295 kb on - strand, within SMc00141
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 2,025,681 - +0.2 2,025,681 - -1.0 2,025,681 - +0.4 2,025,681 - -0.3 2,025,740 + +0.4 2,025,858 + SMc00197 0.11 -0.6 2,025,858 + SMc00197 0.11 +0.2 2,025,859 - SMc00197 0.12 -0.2 2,025,859 - SMc00197 0.12 +0.2 2,025,859 - SMc00197 0.12 +0.7 2,025,912 - SMc00197 0.17 -1.3 2,025,912 - SMc00197 0.17 -0.1 2,025,912 - SMc00197 0.17 +0.7 2,025,969 - SMc00197 0.24 +0.5 2,026,009 + SMc00197 0.28 -0.1 2,026,009 + SMc00197 0.28 -0.5 2,026,009 + SMc00197 0.28 -2.0 2,026,010 - SMc00197 0.28 +0.1 2,026,010 - SMc00197 0.28 +0.3 2,026,010 - SMc00197 0.28 -0.3 2,026,012 - SMc00197 0.28 -0.2 2,026,012 - SMc00197 0.28 -0.2 2,026,012 - SMc00197 0.28 +0.0 2,026,012 - SMc00197 0.28 -0.5 2,026,012 - SMc00197 0.28 +0.2 2,026,145 + SMc00197 0.43 +0.1 2,026,145 + SMc00197 0.43 +0.5 2,026,169 + SMc00197 0.46 +0.5 2,026,169 + SMc00197 0.46 -1.8 2,026,170 - SMc00197 0.46 -0.0 2,026,288 + SMc00197 0.59 +0.0 2,026,288 + SMc00197 0.59 -0.1 2,026,288 + SMc00197 0.59 +0.2 2,026,289 - SMc00197 0.59 +0.7 2,026,289 - SMc00197 0.59 -0.1 2,026,436 + SMc00197 0.75 +0.1 2,026,437 - SMc00197 0.75 -0.1 2,026,437 - SMc00197 0.75 -0.8 2,026,483 + SMc00197 0.80 +0.2 2,026,484 - SMc00197 0.80 -0.8 2,026,588 + -0.4 2,026,589 - -0.8 2,026,590 + -0.5 2,026,590 + +0.4 2,026,591 - -0.3 2,026,591 - -0.1 2,026,591 - +0.1 2,026,591 - -0.6 2,026,597 + -0.2 2,026,598 - -0.6 2,026,660 + -0.9 2,026,661 - +1.1 2,026,953 + SMc00143 0.42 +1.5 2,027,213 + SMc00143 0.81 -0.9 2,027,214 - SMc00143 0.82 -0.9 2,027,311 + +0.1 2,027,439 + SMc00142 0.21 -0.3 2,027,439 + SMc00142 0.21 -0.2 2,027,440 - SMc00142 0.21 -0.4 2,027,441 + SMc00142 0.21 +0.0 2,027,441 + SMc00142 0.21 -0.2 2,027,441 + SMc00142 0.21 +0.3 2,027,442 - SMc00142 0.21 -0.5 2,027,506 - SMc00142 0.33 +0.4 2,027,506 - SMc00142 0.33 -0.5 2,027,536 + SMc00142 0.39 -0.2 2,027,642 - SMc00142 0.59 +0.0 2,027,642 - SMc00142 0.59 -0.6 2,027,656 - SMc00142 0.62 -0.3 2,027,656 - SMc00142 0.62 -0.1 2,027,739 - SMc00142 0.78 -0.2 2,027,739 - SMc00142 0.78 +0.1 2,027,789 - SMc00142 0.87 -0.1 2,027,906 - -0.6 2,027,906 - +0.0 2,027,918 + -0.5 2,027,972 - +0.5 2,027,982 + -0.7 2,027,983 - +0.3 2,027,983 - -1.1 2,028,113 - +0.5 2,028,294 + SMc00141 0.16 +0.1 2,028,294 + SMc00141 0.16 +0.9 2,028,295 - SMc00141 0.16 -0.0
Or see this region's nucleotide sequence