Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0263 and SMa0265 are separated by 21 nucleotides SMa0265 and SMa0267 are separated by 94 nucleotides SMa0267 and SMa0270 overlap by 4 nucleotides
SMa0263: SMa0263 - alcohol dehydrogenase, at 148,163 to 149,362
SMa0263
SMa0265: SMa0265 - dehydrogenase, at 149,384 to 150,388
SMa0265
SMa0267: SMa0267 - GntR family transcriptional regulator, at 150,483 to 151,175
SMa0267
SMa0270: SMa0270 - ABC transporter ATP-binding protein, at 151,172 to 152,764
SMa0270
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1
2 at 148.458 kb on + strand, within SMa0263 at 148.459 kb on - strand, within SMa0263 at 148.467 kb on - strand, within SMa0263 at 148.892 kb on - strand, within SMa0263 at 148.993 kb on - strand, within SMa0263 at 149.001 kb on + strand, within SMa0263 at 149.004 kb on + strand, within SMa0263 at 149.004 kb on + strand, within SMa0263 at 149.005 kb on - strand, within SMa0263 at 149.354 kb on + strand at 149.368 kb on - strand at 149.404 kb on + strand at 149.850 kb on + strand, within SMa0265 at 150.021 kb on + strand, within SMa0265 at 150.024 kb on + strand, within SMa0265 at 150.025 kb on - strand at 150.025 kb on - strand, within SMa0265 at 150.085 kb on + strand, within SMa0265 at 150.461 kb on + strand at 150.469 kb on + strand at 150.487 kb on + strand at 150.558 kb on + strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.581 kb on + strand, within SMa0267 at 150.593 kb on + strand, within SMa0267 at 150.594 kb on - strand, within SMa0267 at 150.725 kb on + strand, within SMa0267 at 150.726 kb on - strand, within SMa0267 at 150.821 kb on + strand, within SMa0267 at 150.897 kb on - strand, within SMa0267 at 150.906 kb on + strand, within SMa0267 at 151.114 kb on - strand at 151.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 148,458 + SMa0263 0.25 +1.6 148,459 - SMa0263 0.25 -0.3 148,467 - SMa0263 0.25 +0.2 148,892 - SMa0263 0.61 +0.6 148,993 - SMa0263 0.69 -0.5 149,001 + SMa0263 0.70 +0.8 149,004 + SMa0263 0.70 +0.5 149,004 + SMa0263 0.70 -0.6 149,005 - SMa0263 0.70 -0.3 149,354 + -1.0 149,368 - -0.4 149,404 + +0.0 149,850 + SMa0265 0.46 +0.6 150,021 + SMa0265 0.63 -1.6 150,024 + SMa0265 0.64 +0.3 150,025 - -0.4 150,025 - SMa0265 0.64 -0.6 150,085 + SMa0265 0.70 -0.4 150,461 + -0.4 150,469 + -0.0 150,487 + -0.8 150,558 + SMa0267 0.11 -0.5 150,571 - SMa0267 0.13 +0.9 150,571 - SMa0267 0.13 -1.2 150,571 - SMa0267 0.13 -1.4 150,571 - SMa0267 0.13 +0.9 150,581 + SMa0267 0.14 +0.2 150,593 + SMa0267 0.16 +1.5 150,594 - SMa0267 0.16 -0.8 150,725 + SMa0267 0.35 -1.2 150,726 - SMa0267 0.35 +0.9 150,821 + SMa0267 0.49 -0.2 150,897 - SMa0267 0.60 +0.9 150,906 + SMa0267 0.61 -0.5 151,114 - +1.9 151,260 - +1.2
Or see this region's nucleotide sequence