Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20981 and SM_b20982 are separated by 77 nucleotides SM_b20982 and SM_b20983 are separated by 45 nucleotides SM_b20983 and SM_b20984 overlap by 16 nucleotides SM_b20984 and SM_b20985 are separated by 3 nucleotides SM_b20985 and SM_b20986 are separated by 2 nucleotides
SM_b20981: SM_b20981 - C4-dicarboxylate transporter substrate-binding protein precursor, at 1,213,597 to 1,214,574
_b20981
SM_b20982: SM_b20982 - hypothetical protein, at 1,214,652 to 1,214,912
_b20982
SM_b20983: SM_b20983 - hypothetical protein, at 1,214,958 to 1,215,320
_b20983
SM_b20984: SM_b20984 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) , at 1,215,305 to 1,217,767
_b20984
SM_b20985: SM_b20985 - nitrite reductase [NAD(P)H], small subunit protein, at 1,217,771 to 1,218,109
_b20985
SM_b20986: SM_b20986 - Nitrate reductase (EC 1.7.99.4) (from data) , at 1,218,112 to 1,220,769
_b20986
Position (kb)
1215
1216
1217
1218 Strain fitness (log2 ratio)
-1
0
1
2 at 1214.438 kb on + strand, within SM_b20981 at 1214.438 kb on + strand, within SM_b20981 at 1214.438 kb on + strand, within SM_b20981 at 1214.438 kb on + strand, within SM_b20981 at 1214.505 kb on - strand at 1214.587 kb on - strand at 1214.587 kb on - strand at 1214.974 kb on - strand at 1215.109 kb on + strand, within SM_b20983 at 1215.268 kb on - strand, within SM_b20983 at 1215.268 kb on - strand, within SM_b20983 at 1215.284 kb on + strand at 1215.285 kb on - strand at 1215.440 kb on + strand at 1215.440 kb on + strand at 1215.440 kb on + strand at 1215.485 kb on + strand at 1215.485 kb on + strand at 1215.518 kb on + strand at 1215.518 kb on + strand at 1215.519 kb on - strand at 1215.542 kb on + strand at 1215.542 kb on + strand at 1215.543 kb on - strand at 1215.543 kb on - strand at 1215.544 kb on + strand at 1215.545 kb on - strand at 1215.545 kb on - strand at 1215.617 kb on + strand, within SM_b20984 at 1215.618 kb on - strand, within SM_b20984 at 1215.698 kb on + strand, within SM_b20984 at 1215.698 kb on + strand, within SM_b20984 at 1215.699 kb on - strand, within SM_b20984 at 1215.699 kb on - strand, within SM_b20984 at 1215.699 kb on - strand, within SM_b20984 at 1215.884 kb on + strand, within SM_b20984 at 1215.884 kb on + strand, within SM_b20984 at 1215.884 kb on + strand, within SM_b20984 at 1215.885 kb on - strand, within SM_b20984 at 1216.169 kb on + strand, within SM_b20984 at 1216.169 kb on + strand, within SM_b20984 at 1216.295 kb on + strand, within SM_b20984 at 1216.367 kb on + strand, within SM_b20984 at 1216.367 kb on + strand, within SM_b20984 at 1216.368 kb on - strand, within SM_b20984 at 1216.368 kb on - strand, within SM_b20984 at 1216.415 kb on + strand, within SM_b20984 at 1216.416 kb on - strand, within SM_b20984 at 1216.495 kb on + strand, within SM_b20984 at 1216.495 kb on + strand, within SM_b20984 at 1216.538 kb on - strand, within SM_b20984 at 1216.739 kb on + strand, within SM_b20984 at 1216.739 kb on + strand, within SM_b20984 at 1216.740 kb on - strand, within SM_b20984 at 1216.740 kb on - strand, within SM_b20984 at 1216.904 kb on + strand, within SM_b20984 at 1216.904 kb on + strand, within SM_b20984 at 1216.905 kb on - strand, within SM_b20984 at 1216.908 kb on - strand, within SM_b20984 at 1216.946 kb on + strand, within SM_b20984 at 1216.946 kb on + strand, within SM_b20984 at 1216.947 kb on - strand, within SM_b20984 at 1217.003 kb on + strand, within SM_b20984 at 1217.003 kb on + strand, within SM_b20984 at 1217.003 kb on + strand, within SM_b20984 at 1217.003 kb on + strand, within SM_b20984 at 1217.003 kb on + strand, within SM_b20984 at 1217.003 kb on + strand, within SM_b20984 at 1217.003 kb on + strand, within SM_b20984 at 1217.004 kb on - strand, within SM_b20984 at 1217.509 kb on + strand, within SM_b20984 at 1217.509 kb on + strand, within SM_b20984 at 1217.510 kb on - strand, within SM_b20984 at 1217.531 kb on + strand at 1217.531 kb on + strand at 1217.532 kb on - strand at 1217.532 kb on - strand at 1217.532 kb on - strand at 1217.564 kb on + strand at 1217.765 kb on + strand at 1218.108 kb on - strand at 1218.143 kb on - strand at 1218.403 kb on + strand, within SM_b20986 at 1218.403 kb on + strand, within SM_b20986 at 1218.403 kb on + strand, within SM_b20986 at 1218.403 kb on + strand, within SM_b20986 at 1218.404 kb on - strand, within SM_b20986 at 1218.404 kb on - strand, within SM_b20986 at 1218.404 kb on - strand, within SM_b20986 at 1218.433 kb on + strand, within SM_b20986 at 1218.434 kb on - strand, within SM_b20986 at 1218.434 kb on - strand, within SM_b20986 at 1218.434 kb on - strand, within SM_b20986 at 1218.434 kb on - strand, within SM_b20986 at 1218.434 kb on - strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.437 kb on - strand, within SM_b20986 at 1218.481 kb on - strand, within SM_b20986 at 1218.565 kb on + strand, within SM_b20986 at 1218.638 kb on - strand, within SM_b20986
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 1,214,438 + SM_b20981 0.86 +0.1 1,214,438 + SM_b20981 0.86 -1.1 1,214,438 + SM_b20981 0.86 +0.3 1,214,438 + SM_b20981 0.86 +0.9 1,214,505 - +0.2 1,214,587 - -0.8 1,214,587 - +1.3 1,214,974 - -0.3 1,215,109 + SM_b20983 0.42 -0.1 1,215,268 - SM_b20983 0.85 -0.2 1,215,268 - SM_b20983 0.85 -0.3 1,215,284 + +0.6 1,215,285 - -0.2 1,215,440 + -0.5 1,215,440 + -0.5 1,215,440 + -0.4 1,215,485 + -0.3 1,215,485 + +0.2 1,215,518 + -0.2 1,215,518 + -0.4 1,215,519 - +0.4 1,215,542 + -0.2 1,215,542 + +0.0 1,215,543 - +0.1 1,215,543 - +1.1 1,215,544 + -0.4 1,215,545 - -0.1 1,215,545 - +0.6 1,215,617 + SM_b20984 0.13 +0.4 1,215,618 - SM_b20984 0.13 -0.9 1,215,698 + SM_b20984 0.16 +0.8 1,215,698 + SM_b20984 0.16 +0.4 1,215,699 - SM_b20984 0.16 -1.1 1,215,699 - SM_b20984 0.16 +0.1 1,215,699 - SM_b20984 0.16 +0.2 1,215,884 + SM_b20984 0.24 -0.4 1,215,884 + SM_b20984 0.24 -0.9 1,215,884 + SM_b20984 0.24 -0.2 1,215,885 - SM_b20984 0.24 +0.3 1,216,169 + SM_b20984 0.35 -1.0 1,216,169 + SM_b20984 0.35 +0.6 1,216,295 + SM_b20984 0.40 +0.1 1,216,367 + SM_b20984 0.43 +0.3 1,216,367 + SM_b20984 0.43 +1.3 1,216,368 - SM_b20984 0.43 -0.9 1,216,368 - SM_b20984 0.43 +0.7 1,216,415 + SM_b20984 0.45 +0.3 1,216,416 - SM_b20984 0.45 +0.4 1,216,495 + SM_b20984 0.48 +0.2 1,216,495 + SM_b20984 0.48 +0.1 1,216,538 - SM_b20984 0.50 -0.7 1,216,739 + SM_b20984 0.58 +0.5 1,216,739 + SM_b20984 0.58 +0.1 1,216,740 - SM_b20984 0.58 +0.4 1,216,740 - SM_b20984 0.58 -0.4 1,216,904 + SM_b20984 0.65 -0.1 1,216,904 + SM_b20984 0.65 -0.1 1,216,905 - SM_b20984 0.65 -0.0 1,216,908 - SM_b20984 0.65 -0.2 1,216,946 + SM_b20984 0.67 -0.7 1,216,946 + SM_b20984 0.67 -0.6 1,216,947 - SM_b20984 0.67 -0.0 1,217,003 + SM_b20984 0.69 +0.7 1,217,003 + SM_b20984 0.69 +0.3 1,217,003 + SM_b20984 0.69 -0.2 1,217,003 + SM_b20984 0.69 -0.2 1,217,003 + SM_b20984 0.69 -0.2 1,217,003 + SM_b20984 0.69 -0.2 1,217,003 + SM_b20984 0.69 +1.1 1,217,004 - SM_b20984 0.69 -0.5 1,217,509 + SM_b20984 0.89 +0.9 1,217,509 + SM_b20984 0.89 +0.8 1,217,510 - SM_b20984 0.90 -0.0 1,217,531 + -0.7 1,217,531 + +0.3 1,217,532 - -0.3 1,217,532 - +0.0 1,217,532 - -0.4 1,217,564 + -0.0 1,217,765 + +0.1 1,218,108 - -0.5 1,218,143 - +1.1 1,218,403 + SM_b20986 0.11 +1.5 1,218,403 + SM_b20986 0.11 -1.4 1,218,403 + SM_b20986 0.11 +0.1 1,218,403 + SM_b20986 0.11 -0.1 1,218,404 - SM_b20986 0.11 +0.1 1,218,404 - SM_b20986 0.11 +0.2 1,218,404 - SM_b20986 0.11 -1.4 1,218,433 + SM_b20986 0.12 -1.3 1,218,434 - SM_b20986 0.12 -0.2 1,218,434 - SM_b20986 0.12 +0.4 1,218,434 - SM_b20986 0.12 +1.1 1,218,434 - SM_b20986 0.12 +0.9 1,218,434 - SM_b20986 0.12 -0.1 1,218,436 + SM_b20986 0.12 -0.8 1,218,436 + SM_b20986 0.12 -1.5 1,218,436 + SM_b20986 0.12 -0.1 1,218,436 + SM_b20986 0.12 +0.7 1,218,436 + SM_b20986 0.12 +1.9 1,218,436 + SM_b20986 0.12 +0.2 1,218,437 - SM_b20986 0.12 -0.5 1,218,481 - SM_b20986 0.14 +0.2 1,218,565 + SM_b20986 0.17 -0.8 1,218,638 - SM_b20986 0.20 +0.1
Or see this region's nucleotide sequence