Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20869 and SM_b20870 are separated by 18 nucleotides SM_b20870 and SM_b20871 are separated by 94 nucleotides SM_b20871 and SM_b20872 are separated by 138 nucleotides
SM_b20869: SM_b20869 - two-component response regulator protein, at 1,276,480 to 1,277,181
_b20869
SM_b20870: SM_b20870 - LysR family transcriptional regulator, at 1,277,200 to 1,278,096
_b20870
SM_b20871: SM_b20871 - short-chain dehydrogenase, at 1,278,191 to 1,278,940
_b20871
SM_b20872: SM_b20872 - transthyretin-like protein, at 1,279,079 to 1,279,468
_b20872
Position (kb)
1277
1278
1279 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1276.347 kb on - strand at 1276.488 kb on + strand at 1276.489 kb on - strand at 1276.520 kb on + strand at 1276.673 kb on + strand, within SM_b20869 at 1276.673 kb on + strand, within SM_b20869 at 1276.673 kb on + strand, within SM_b20869 at 1276.673 kb on + strand, within SM_b20869 at 1276.674 kb on - strand, within SM_b20869 at 1276.674 kb on - strand, within SM_b20869 at 1276.674 kb on - strand, within SM_b20869 at 1276.674 kb on - strand, within SM_b20869 at 1276.674 kb on - strand, within SM_b20869 at 1276.890 kb on - strand, within SM_b20869 at 1277.085 kb on - strand, within SM_b20869 at 1277.085 kb on - strand, within SM_b20869 at 1277.091 kb on + strand, within SM_b20869 at 1277.092 kb on - strand, within SM_b20869 at 1277.206 kb on - strand at 1277.295 kb on + strand, within SM_b20870 at 1277.295 kb on + strand, within SM_b20870 at 1277.295 kb on + strand, within SM_b20870 at 1277.296 kb on - strand, within SM_b20870 at 1277.296 kb on - strand, within SM_b20870 at 1277.296 kb on - strand, within SM_b20870 at 1277.385 kb on - strand, within SM_b20870 at 1277.385 kb on - strand, within SM_b20870 at 1277.458 kb on + strand, within SM_b20870 at 1277.459 kb on - strand, within SM_b20870 at 1277.497 kb on + strand, within SM_b20870 at 1277.497 kb on + strand, within SM_b20870 at 1277.606 kb on - strand, within SM_b20870 at 1277.606 kb on - strand, within SM_b20870 at 1277.628 kb on + strand, within SM_b20870 at 1277.628 kb on + strand, within SM_b20870 at 1277.629 kb on - strand, within SM_b20870 at 1277.629 kb on - strand, within SM_b20870 at 1277.631 kb on - strand, within SM_b20870 at 1277.631 kb on - strand, within SM_b20870 at 1277.631 kb on - strand, within SM_b20870 at 1277.672 kb on + strand, within SM_b20870 at 1277.672 kb on + strand, within SM_b20870 at 1277.673 kb on - strand, within SM_b20870 at 1277.673 kb on - strand, within SM_b20870 at 1277.673 kb on - strand, within SM_b20870 at 1277.721 kb on + strand, within SM_b20870 at 1277.721 kb on + strand, within SM_b20870 at 1277.721 kb on + strand, within SM_b20870 at 1277.722 kb on - strand, within SM_b20870 at 1277.773 kb on + strand, within SM_b20870 at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.137 kb on + strand at 1278.160 kb on + strand at 1278.161 kb on - strand at 1278.164 kb on + strand at 1278.165 kb on - strand at 1278.185 kb on + strand at 1278.186 kb on - strand at 1278.186 kb on - strand at 1278.235 kb on + strand at 1278.440 kb on + strand, within SM_b20871 at 1278.440 kb on + strand, within SM_b20871 at 1278.440 kb on + strand, within SM_b20871 at 1278.440 kb on + strand, within SM_b20871 at 1278.440 kb on + strand, within SM_b20871 at 1278.441 kb on - strand, within SM_b20871 at 1278.441 kb on - strand, within SM_b20871 at 1278.441 kb on - strand, within SM_b20871 at 1278.441 kb on - strand, within SM_b20871 at 1278.441 kb on - strand, within SM_b20871 at 1278.441 kb on - strand, within SM_b20871 at 1278.500 kb on + strand, within SM_b20871 at 1278.500 kb on + strand, within SM_b20871 at 1278.500 kb on + strand, within SM_b20871 at 1278.501 kb on - strand, within SM_b20871 at 1278.501 kb on - strand, within SM_b20871 at 1278.592 kb on + strand, within SM_b20871 at 1278.592 kb on + strand, within SM_b20871 at 1278.592 kb on + strand, within SM_b20871 at 1278.639 kb on - strand, within SM_b20871 at 1278.715 kb on - strand, within SM_b20871 at 1278.715 kb on - strand, within SM_b20871 at 1278.978 kb on + strand at 1278.979 kb on - strand at 1279.003 kb on - strand at 1279.006 kb on + strand at 1279.030 kb on + strand at 1279.030 kb on + strand at 1279.030 kb on + strand at 1279.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 1,276,347 - +0.2 1,276,488 + -0.4 1,276,489 - -0.7 1,276,520 + +0.0 1,276,673 + SM_b20869 0.27 +0.2 1,276,673 + SM_b20869 0.27 -0.2 1,276,673 + SM_b20869 0.27 +0.1 1,276,673 + SM_b20869 0.27 -0.7 1,276,674 - SM_b20869 0.28 -0.1 1,276,674 - SM_b20869 0.28 -1.0 1,276,674 - SM_b20869 0.28 +0.7 1,276,674 - SM_b20869 0.28 -0.9 1,276,674 - SM_b20869 0.28 +0.6 1,276,890 - SM_b20869 0.58 -0.6 1,277,085 - SM_b20869 0.86 -1.4 1,277,085 - SM_b20869 0.86 -2.3 1,277,091 + SM_b20869 0.87 -2.6 1,277,092 - SM_b20869 0.87 +0.3 1,277,206 - +0.2 1,277,295 + SM_b20870 0.11 +1.2 1,277,295 + SM_b20870 0.11 -0.3 1,277,295 + SM_b20870 0.11 -1.2 1,277,296 - SM_b20870 0.11 -0.8 1,277,296 - SM_b20870 0.11 +2.9 1,277,296 - SM_b20870 0.11 +0.2 1,277,385 - SM_b20870 0.21 -0.7 1,277,385 - SM_b20870 0.21 -0.2 1,277,458 + SM_b20870 0.29 +1.9 1,277,459 - SM_b20870 0.29 -1.1 1,277,497 + SM_b20870 0.33 +0.6 1,277,497 + SM_b20870 0.33 -0.2 1,277,606 - SM_b20870 0.45 +0.9 1,277,606 - SM_b20870 0.45 -0.3 1,277,628 + SM_b20870 0.48 -1.2 1,277,628 + SM_b20870 0.48 -0.2 1,277,629 - SM_b20870 0.48 -0.9 1,277,629 - SM_b20870 0.48 -0.3 1,277,631 - SM_b20870 0.48 -1.6 1,277,631 - SM_b20870 0.48 +0.8 1,277,631 - SM_b20870 0.48 -0.7 1,277,672 + SM_b20870 0.53 -0.4 1,277,672 + SM_b20870 0.53 -0.7 1,277,673 - SM_b20870 0.53 +1.3 1,277,673 - SM_b20870 0.53 -0.9 1,277,673 - SM_b20870 0.53 -1.0 1,277,721 + SM_b20870 0.58 -0.4 1,277,721 + SM_b20870 0.58 -1.3 1,277,721 + SM_b20870 0.58 -0.3 1,277,722 - SM_b20870 0.58 -0.8 1,277,773 + SM_b20870 0.64 -1.0 1,278,137 + -0.3 1,278,137 + -0.1 1,278,137 + -0.1 1,278,137 + +0.0 1,278,137 + +0.5 1,278,137 + +0.1 1,278,137 + -1.1 1,278,160 + +0.2 1,278,161 - -0.4 1,278,164 + +0.8 1,278,165 - -0.1 1,278,185 + +0.0 1,278,186 - -0.7 1,278,186 - -0.7 1,278,235 + -0.2 1,278,440 + SM_b20871 0.33 +0.9 1,278,440 + SM_b20871 0.33 -0.3 1,278,440 + SM_b20871 0.33 -1.0 1,278,440 + SM_b20871 0.33 +0.1 1,278,440 + SM_b20871 0.33 -0.8 1,278,441 - SM_b20871 0.33 -0.3 1,278,441 - SM_b20871 0.33 -0.4 1,278,441 - SM_b20871 0.33 +1.0 1,278,441 - SM_b20871 0.33 +0.9 1,278,441 - SM_b20871 0.33 +0.3 1,278,441 - SM_b20871 0.33 +0.6 1,278,500 + SM_b20871 0.41 -0.5 1,278,500 + SM_b20871 0.41 +1.2 1,278,500 + SM_b20871 0.41 +0.2 1,278,501 - SM_b20871 0.41 -1.1 1,278,501 - SM_b20871 0.41 -0.5 1,278,592 + SM_b20871 0.53 +0.3 1,278,592 + SM_b20871 0.53 -0.2 1,278,592 + SM_b20871 0.53 -0.1 1,278,639 - SM_b20871 0.60 -0.1 1,278,715 - SM_b20871 0.70 +0.1 1,278,715 - SM_b20871 0.70 +0.0 1,278,978 + +1.3 1,278,979 - -1.0 1,279,003 - +0.8 1,279,006 + -0.5 1,279,030 + -0.0 1,279,030 + +0.2 1,279,030 + -1.0 1,279,031 - +0.7
Or see this region's nucleotide sequence