Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20704 and SM_b20705 are separated by 314 nucleotides SM_b20705 and SM_b20706 are separated by 133 nucleotides SM_b20706 and SM_b20707 are separated by 51 nucleotides
SM_b20704: SM_b20704 - glycogen synthase, at 1,505,461 to 1,506,921
_b20704
SM_b20705: SM_b20705 - hypothetical protein, at 1,507,236 to 1,508,147
_b20705
SM_b20706: SM_b20706 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,508,281 to 1,509,057
_b20706
SM_b20707: SM_b20707 - adenylate cyclase, at 1,509,109 to 1,510,371
_b20707
Position (kb)
1507
1508
1509 Strain fitness (log2 ratio)
-1
0
1
2 at 1506.254 kb on - strand, within SM_b20704 at 1506.254 kb on - strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.510 kb on - strand, within SM_b20704 at 1506.611 kb on - strand, within SM_b20704 at 1506.617 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.720 kb on - strand, within SM_b20704 at 1506.749 kb on + strand, within SM_b20704 at 1506.749 kb on + strand, within SM_b20704 at 1506.750 kb on - strand, within SM_b20704 at 1506.862 kb on + strand at 1507.097 kb on + strand at 1507.097 kb on + strand at 1507.098 kb on - strand at 1507.098 kb on - strand at 1507.305 kb on - strand at 1507.368 kb on + strand, within SM_b20705 at 1507.391 kb on + strand, within SM_b20705 at 1507.439 kb on - strand, within SM_b20705 at 1507.543 kb on - strand, within SM_b20705 at 1507.569 kb on + strand, within SM_b20705 at 1507.569 kb on + strand, within SM_b20705 at 1507.570 kb on - strand, within SM_b20705 at 1507.590 kb on + strand, within SM_b20705 at 1507.590 kb on + strand, within SM_b20705 at 1507.990 kb on - strand, within SM_b20705 at 1507.990 kb on - strand, within SM_b20705 at 1507.990 kb on - strand, within SM_b20705 at 1507.990 kb on - strand, within SM_b20705 at 1507.990 kb on - strand, within SM_b20705 at 1507.991 kb on + strand, within SM_b20705 at 1507.991 kb on + strand, within SM_b20705 at 1507.991 kb on + strand, within SM_b20705 at 1507.992 kb on - strand, within SM_b20705 at 1507.992 kb on - strand, within SM_b20705 at 1507.997 kb on - strand, within SM_b20705 at 1507.997 kb on - strand, within SM_b20705 at 1508.137 kb on + strand at 1508.146 kb on - strand at 1508.233 kb on - strand at 1508.377 kb on + strand, within SM_b20706 at 1508.527 kb on + strand, within SM_b20706 at 1508.527 kb on + strand, within SM_b20706 at 1508.597 kb on - strand, within SM_b20706 at 1508.597 kb on - strand, within SM_b20706 at 1508.713 kb on + strand, within SM_b20706 at 1508.926 kb on - strand, within SM_b20706 at 1509.004 kb on + strand at 1509.005 kb on - strand at 1509.005 kb on - strand at 1509.005 kb on - strand at 1509.005 kb on - strand at 1509.025 kb on + strand at 1509.026 kb on - strand at 1509.026 kb on - strand at 1509.043 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 1,506,254 - SM_b20704 0.54 -0.4 1,506,254 - SM_b20704 0.54 -0.8 1,506,509 + SM_b20704 0.72 -0.4 1,506,509 + SM_b20704 0.72 -0.4 1,506,509 + SM_b20704 0.72 -0.3 1,506,509 + SM_b20704 0.72 -1.0 1,506,509 + SM_b20704 0.72 -0.5 1,506,510 - SM_b20704 0.72 -0.5 1,506,611 - SM_b20704 0.79 -0.0 1,506,617 + SM_b20704 0.79 +0.8 1,506,719 + SM_b20704 0.86 +0.4 1,506,719 + SM_b20704 0.86 +0.1 1,506,719 + SM_b20704 0.86 -0.0 1,506,720 - SM_b20704 0.86 +0.0 1,506,749 + SM_b20704 0.88 +0.9 1,506,749 + SM_b20704 0.88 -0.8 1,506,750 - SM_b20704 0.88 +1.6 1,506,862 + -0.3 1,507,097 + +0.1 1,507,097 + +0.2 1,507,098 - +1.1 1,507,098 - +0.4 1,507,305 - +0.3 1,507,368 + SM_b20705 0.14 -1.0 1,507,391 + SM_b20705 0.17 -0.6 1,507,439 - SM_b20705 0.22 -0.4 1,507,543 - SM_b20705 0.34 -0.3 1,507,569 + SM_b20705 0.37 -0.4 1,507,569 + SM_b20705 0.37 -0.2 1,507,570 - SM_b20705 0.37 +0.3 1,507,590 + SM_b20705 0.39 -0.8 1,507,590 + SM_b20705 0.39 -0.8 1,507,990 - SM_b20705 0.83 -0.1 1,507,990 - SM_b20705 0.83 +0.2 1,507,990 - SM_b20705 0.83 -0.2 1,507,990 - SM_b20705 0.83 -0.2 1,507,990 - SM_b20705 0.83 -0.9 1,507,991 + SM_b20705 0.83 -0.4 1,507,991 + SM_b20705 0.83 -0.9 1,507,991 + SM_b20705 0.83 -1.0 1,507,992 - SM_b20705 0.83 +0.1 1,507,992 - SM_b20705 0.83 +1.9 1,507,997 - SM_b20705 0.83 -0.8 1,507,997 - SM_b20705 0.83 -0.6 1,508,137 + -0.2 1,508,146 - +0.5 1,508,233 - +0.8 1,508,377 + SM_b20706 0.12 +0.6 1,508,527 + SM_b20706 0.32 +0.1 1,508,527 + SM_b20706 0.32 -0.2 1,508,597 - SM_b20706 0.41 +0.1 1,508,597 - SM_b20706 0.41 +0.4 1,508,713 + SM_b20706 0.56 -0.3 1,508,926 - SM_b20706 0.83 -0.4 1,509,004 + +0.6 1,509,005 - -0.1 1,509,005 - +0.0 1,509,005 - -0.2 1,509,005 - +0.3 1,509,025 + +0.1 1,509,026 - +0.3 1,509,026 - +0.1 1,509,043 + +0.4
Or see this region's nucleotide sequence