Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20100 and SM_b20101 are separated by 60 nucleotides SM_b20101 and SM_b20102 are separated by 87 nucleotides
SM_b20100: SM_b20100 - dehydrogenase, at 108,761 to 109,747
_b20100
SM_b20101: SM_b20101 - hydroxyglutarate oxidase, at 109,808 to 111,088
_b20101
SM_b20102: SM_b20102 - acetoin catabolism regulatory protein, at 111,176 to 113,059
_b20102
Position (kb) 109
110
111
112 Strain fitness (log2 ratio) -1
0
1
2 at 108.992 kb on + strand, within SM_b20100 at 109.233 kb on - strand, within SM_b20100 at 109.424 kb on + strand, within SM_b20100 at 109.425 kb on - strand, within SM_b20100 at 109.528 kb on - strand, within SM_b20100 at 109.571 kb on + strand, within SM_b20100 at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.650 kb on - strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.797 kb on - strand at 109.797 kb on - strand at 109.797 kb on - strand at 109.797 kb on - strand at 109.845 kb on - strand at 109.850 kb on + strand at 109.850 kb on + strand at 109.851 kb on - strand at 109.851 kb on - strand at 109.851 kb on - strand at 110.004 kb on - strand, within SM_b20101 at 110.004 kb on - strand, within SM_b20101 at 110.006 kb on + strand, within SM_b20101 at 110.006 kb on + strand, within SM_b20101 at 110.006 kb on + strand, within SM_b20101 at 110.186 kb on + strand, within SM_b20101 at 110.186 kb on + strand, within SM_b20101 at 110.186 kb on + strand, within SM_b20101 at 110.187 kb on - strand, within SM_b20101 at 110.228 kb on - strand, within SM_b20101 at 110.513 kb on + strand, within SM_b20101 at 110.517 kb on - strand, within SM_b20101 at 110.517 kb on - strand, within SM_b20101 at 110.562 kb on - strand, within SM_b20101 at 110.801 kb on + strand, within SM_b20101 at 110.802 kb on - strand, within SM_b20101 at 110.842 kb on - strand, within SM_b20101 at 110.842 kb on - strand, within SM_b20101 at 110.842 kb on - strand, within SM_b20101 at 111.087 kb on - strand at 111.111 kb on + strand at 111.111 kb on + strand at 111.317 kb on + strand at 111.317 kb on + strand at 111.318 kb on - strand at 111.318 kb on - strand at 111.319 kb on + strand at 111.340 kb on + strand at 111.340 kb on + strand at 111.341 kb on - strand at 111.425 kb on - strand, within SM_b20102 at 111.428 kb on + strand, within SM_b20102 at 111.428 kb on + strand, within SM_b20102 at 111.428 kb on + strand, within SM_b20102 at 111.428 kb on + strand, within SM_b20102 at 111.428 kb on + strand, within SM_b20102 at 111.429 kb on - strand, within SM_b20102 at 111.429 kb on - strand, within SM_b20102 at 111.519 kb on - strand, within SM_b20102 at 111.663 kb on - strand, within SM_b20102 at 111.809 kb on - strand, within SM_b20102 at 112.030 kb on + strand, within SM_b20102
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 108,992 + SM_b20100 0.23 -0.2 109,233 - SM_b20100 0.48 +1.7 109,424 + SM_b20100 0.67 +0.1 109,425 - SM_b20100 0.67 +0.4 109,528 - SM_b20100 0.78 -1.0 109,571 + SM_b20100 0.82 +1.9 109,649 + -1.2 109,649 + -1.0 109,649 + -0.2 109,649 + +1.3 109,649 + -0.4 109,650 - -0.3 109,796 + -0.2 109,796 + -0.3 109,796 + +0.6 109,796 + -0.8 109,796 + +0.2 109,797 - +0.1 109,797 - +0.5 109,797 - -0.2 109,797 - -0.5 109,845 - +0.9 109,850 + -0.5 109,850 + -0.6 109,851 - +0.3 109,851 - -0.1 109,851 - +0.5 110,004 - SM_b20101 0.15 -0.4 110,004 - SM_b20101 0.15 -0.7 110,006 + SM_b20101 0.15 -0.1 110,006 + SM_b20101 0.15 -0.8 110,006 + SM_b20101 0.15 -0.1 110,186 + SM_b20101 0.30 -0.9 110,186 + SM_b20101 0.30 -1.2 110,186 + SM_b20101 0.30 -0.7 110,187 - SM_b20101 0.30 -1.1 110,228 - SM_b20101 0.33 -0.9 110,513 + SM_b20101 0.55 +0.7 110,517 - SM_b20101 0.55 -0.7 110,517 - SM_b20101 0.55 +0.4 110,562 - SM_b20101 0.59 -0.9 110,801 + SM_b20101 0.78 +0.2 110,802 - SM_b20101 0.78 +0.3 110,842 - SM_b20101 0.81 -0.2 110,842 - SM_b20101 0.81 +0.8 110,842 - SM_b20101 0.81 -0.4 111,087 - -0.2 111,111 + +0.3 111,111 + +0.9 111,317 + -0.5 111,317 + -1.4 111,318 - +0.0 111,318 - -0.8 111,319 + +0.3 111,340 + -0.1 111,340 + -0.1 111,341 - -0.1 111,425 - SM_b20102 0.13 +1.1 111,428 + SM_b20102 0.13 +0.1 111,428 + SM_b20102 0.13 -0.1 111,428 + SM_b20102 0.13 -0.4 111,428 + SM_b20102 0.13 -0.3 111,428 + SM_b20102 0.13 -0.5 111,429 - SM_b20102 0.13 -0.5 111,429 - SM_b20102 0.13 +1.0 111,519 - SM_b20102 0.18 +0.1 111,663 - SM_b20102 0.26 -0.2 111,809 - SM_b20102 0.34 +0.9 112,030 + SM_b20102 0.45 -0.0
Or see this region's nucleotide sequence