Strain Fitness in Sinorhizobium meliloti 1021 around SMa0689

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0687 and SMa0689 are separated by 188 nucleotidesSMa0689 and SMa0690 are separated by 20 nucleotides SMa0687: SMa0687 - hypothetical protein, at 371,790 to 372,296 SMa0687 SMa0689: SMa0689 - hypothetical protein, at 372,485 to 373,435 SMa0689 SMa0690: SMa0690 - hypothetical protein, at 373,456 to 374,856 SMa0690 Position (kb) 372 373 374Strain fitness (log2 ratio) -2 -1 0 1 2 3at 371.510 kb on - strandat 371.510 kb on - strandat 371.713 kb on - strandat 371.713 kb on - strandat 371.783 kb on + strandat 371.787 kb on + strandat 371.788 kb on - strandat 371.788 kb on - strandat 371.791 kb on + strandat 371.791 kb on + strandat 371.791 kb on + strandat 371.792 kb on - strandat 371.792 kb on - strandat 371.796 kb on - strandat 371.796 kb on - strandat 371.912 kb on - strand, within SMa0687at 371.942 kb on - strand, within SMa0687at 371.942 kb on - strand, within SMa0687at 372.012 kb on + strand, within SMa0687at 372.013 kb on - strand, within SMa0687at 372.013 kb on - strand, within SMa0687at 372.016 kb on - strand, within SMa0687at 372.016 kb on - strand, within SMa0687at 372.062 kb on - strand, within SMa0687at 372.073 kb on + strand, within SMa0687at 372.074 kb on - strand, within SMa0687at 372.100 kb on - strand, within SMa0687at 372.202 kb on + strand, within SMa0687at 372.302 kb on + strandat 372.302 kb on + strandat 372.302 kb on + strandat 372.303 kb on - strandat 372.357 kb on - strandat 372.368 kb on + strandat 372.373 kb on - strandat 372.418 kb on + strandat 372.418 kb on + strandat 372.418 kb on + strandat 372.419 kb on - strandat 372.530 kb on + strandat 372.531 kb on - strandat 372.531 kb on - strandat 372.531 kb on - strandat 372.576 kb on + strandat 372.577 kb on - strandat 372.684 kb on + strand, within SMa0689at 372.690 kb on + strand, within SMa0689at 372.751 kb on - strand, within SMa0689at 372.751 kb on - strand, within SMa0689at 372.794 kb on - strand, within SMa0689at 372.794 kb on - strand, within SMa0689at 372.841 kb on - strand, within SMa0689at 372.920 kb on + strand, within SMa0689at 372.921 kb on - strand, within SMa0689at 372.921 kb on - strand, within SMa0689at 372.924 kb on + strand, within SMa0689at 372.924 kb on + strand, within SMa0689at 372.925 kb on - strand, within SMa0689at 372.925 kb on - strand, within SMa0689at 372.925 kb on - strand, within SMa0689at 372.925 kb on - strand, within SMa0689at 372.945 kb on + strand, within SMa0689at 372.945 kb on + strand, within SMa0689at 372.945 kb on + strand, within SMa0689at 372.946 kb on - strand, within SMa0689at 372.946 kb on - strand, within SMa0689at 373.020 kb on + strand, within SMa0689at 373.021 kb on - strand, within SMa0689at 373.021 kb on - strand, within SMa0689at 373.321 kb on - strand, within SMa0689at 373.422 kb on - strandat 373.422 kb on - strandat 373.424 kb on + strandat 373.425 kb on - strandat 373.425 kb on - strandat 373.425 kb on - strandat 373.425 kb on - strandat 373.435 kb on + strandat 373.873 kb on + strand, within SMa0690at 373.873 kb on + strand, within SMa0690at 373.873 kb on + strand, within SMa0690at 373.874 kb on - strand, within SMa0690at 373.874 kb on - strand, within SMa0690at 373.968 kb on + strand, within SMa0690at 374.080 kb on + strand, within SMa0690at 374.080 kb on + strand, within SMa0690at 374.080 kb on + strand, within SMa0690at 374.081 kb on - strand, within SMa0690at 374.081 kb on - strand, within SMa0690at 374.081 kb on - strand, within SMa0690at 374.081 kb on - strand, within SMa0690at 374.229 kb on - strand, within SMa0690at 374.231 kb on + strand, within SMa0690at 374.231 kb on + strand, within SMa0690at 374.232 kb on - strand, within SMa0690at 374.277 kb on - strand, within SMa0690at 374.318 kb on + strand, within SMa0690at 374.318 kb on + strand, within SMa0690at 374.322 kb on + strand, within SMa0690at 374.397 kb on + strand, within SMa0690

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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371,510 - +0.2
371,510 - -0.5
371,713 - -0.5
371,713 - +0.3
371,783 + -0.2
371,787 + -0.5
371,788 - -0.7
371,788 - -0.9
371,791 + -1.4
371,791 + -0.5
371,791 + -0.2
371,792 - -0.3
371,792 - -1.0
371,796 - +0.6
371,796 - -0.1
371,912 - SMa0687 0.24 +0.4
371,942 - SMa0687 0.30 -0.0
371,942 - SMa0687 0.30 -0.4
372,012 + SMa0687 0.44 -0.6
372,013 - SMa0687 0.44 -0.4
372,013 - SMa0687 0.44 -0.4
372,016 - SMa0687 0.45 -0.1
372,016 - SMa0687 0.45 -0.2
372,062 - SMa0687 0.54 -0.1
372,073 + SMa0687 0.56 -0.3
372,074 - SMa0687 0.56 -0.7
372,100 - SMa0687 0.61 -0.0
372,202 + SMa0687 0.81 -1.0
372,302 + +0.8
372,302 + +0.1
372,302 + -0.2
372,303 - -0.6
372,357 - +0.2
372,368 + +0.1
372,373 - -0.9
372,418 + +1.3
372,418 + -1.2
372,418 + -0.4
372,419 - +0.5
372,530 + -0.5
372,531 - +0.3
372,531 - -0.3
372,531 - -1.3
372,576 + -0.2
372,577 - -0.1
372,684 + SMa0689 0.21 +0.2
372,690 + SMa0689 0.22 +0.7
372,751 - SMa0689 0.28 +0.5
372,751 - SMa0689 0.28 -0.1
372,794 - SMa0689 0.32 -1.0
372,794 - SMa0689 0.32 -0.5
372,841 - SMa0689 0.37 -0.5
372,920 + SMa0689 0.46 -1.0
372,921 - SMa0689 0.46 +1.8
372,921 - SMa0689 0.46 +0.4
372,924 + SMa0689 0.46 +0.2
372,924 + SMa0689 0.46 +2.8
372,925 - SMa0689 0.46 -1.7
372,925 - SMa0689 0.46 -0.5
372,925 - SMa0689 0.46 -1.9
372,925 - SMa0689 0.46 -0.0
372,945 + SMa0689 0.48 -0.5
372,945 + SMa0689 0.48 -0.8
372,945 + SMa0689 0.48 -1.5
372,946 - SMa0689 0.48 +0.6
372,946 - SMa0689 0.48 -0.6
373,020 + SMa0689 0.56 +0.1
373,021 - SMa0689 0.56 +0.2
373,021 - SMa0689 0.56 +1.4
373,321 - SMa0689 0.88 +0.1
373,422 - +0.7
373,422 - +0.0
373,424 + +0.3
373,425 - -0.8
373,425 - +0.8
373,425 - -0.2
373,425 - +1.2
373,435 + +0.4
373,873 + SMa0690 0.30 +0.2
373,873 + SMa0690 0.30 +0.3
373,873 + SMa0690 0.30 +0.5
373,874 - SMa0690 0.30 -0.0
373,874 - SMa0690 0.30 -0.2
373,968 + SMa0690 0.37 -0.4
374,080 + SMa0690 0.45 -0.2
374,080 + SMa0690 0.45 -0.7
374,080 + SMa0690 0.45 -0.3
374,081 - SMa0690 0.45 +0.1
374,081 - SMa0690 0.45 -1.4
374,081 - SMa0690 0.45 +0.1
374,081 - SMa0690 0.45 -0.5
374,229 - SMa0690 0.55 -1.0
374,231 + SMa0690 0.55 +0.4
374,231 + SMa0690 0.55 -0.0
374,232 - SMa0690 0.55 -0.1
374,277 - SMa0690 0.59 +0.5
374,318 + SMa0690 0.62 -0.1
374,318 + SMa0690 0.62 -0.3
374,322 + SMa0690 0.62 +1.0
374,397 + SMa0690 0.67 +0.1

Or see this region's nucleotide sequence