Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0279 and SMa0280 are separated by 145 nucleotides SMa0280 and SMa0281 are separated by 54 nucleotides SMa0281 and SMa0285 are separated by 360 nucleotides
SMa0279: SMa0279 - hypothetical protein, at 156,800 to 157,411
SMa0279
SMa0280: SMa0280 - hypothetical protein, at 157,557 to 158,345
SMa0280
SMa0281: SMa0281 - MerR family transcriptional regulator, at 158,400 to 158,804
SMa0281
SMa0285: SMa0285 - hypothetical protein, at 159,165 to 159,389
SMa0285
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1 at 156.568 kb on + strand at 156.574 kb on + strand at 156.574 kb on + strand at 156.575 kb on - strand at 156.741 kb on - strand at 156.741 kb on - strand at 156.748 kb on - strand at 156.751 kb on - strand at 156.751 kb on - strand at 156.755 kb on - strand at 156.755 kb on - strand at 156.826 kb on - strand at 156.826 kb on - strand at 156.858 kb on + strand at 156.967 kb on + strand, within SMa0279 at 156.967 kb on + strand, within SMa0279 at 156.968 kb on - strand, within SMa0279 at 156.983 kb on + strand, within SMa0279 at 157.261 kb on - strand, within SMa0279 at 157.377 kb on - strand at 157.401 kb on + strand at 157.401 kb on + strand at 157.402 kb on - strand at 157.449 kb on + strand at 157.450 kb on - strand at 157.491 kb on - strand at 157.558 kb on + strand at 157.558 kb on + strand at 157.559 kb on - strand at 157.563 kb on - strand at 157.563 kb on - strand at 157.576 kb on - strand at 157.627 kb on - strand at 157.711 kb on + strand, within SMa0280 at 157.712 kb on - strand, within SMa0280 at 157.712 kb on - strand, within SMa0280 at 157.825 kb on + strand, within SMa0280 at 157.826 kb on - strand, within SMa0280 at 157.831 kb on + strand, within SMa0280 at 157.837 kb on + strand, within SMa0280 at 157.844 kb on - strand, within SMa0280 at 157.844 kb on - strand, within SMa0280 at 157.872 kb on + strand at 157.873 kb on + strand, within SMa0280 at 157.873 kb on + strand, within SMa0280 at 157.873 kb on + strand, within SMa0280 at 157.874 kb on - strand, within SMa0280 at 157.874 kb on - strand, within SMa0280 at 157.974 kb on - strand, within SMa0280 at 158.054 kb on - strand, within SMa0280 at 158.286 kb on + strand at 158.563 kb on + strand, within SMa0281 at 158.573 kb on - strand, within SMa0281 at 158.712 kb on - strand, within SMa0281 at 158.735 kb on + strand, within SMa0281 at 158.735 kb on + strand, within SMa0281 at 158.846 kb on - strand at 158.926 kb on + strand at 158.927 kb on - strand at 158.927 kb on - strand at 158.927 kb on - strand at 158.975 kb on - strand at 158.975 kb on - strand at 159.012 kb on - strand at 159.072 kb on - strand at 159.135 kb on + strand at 159.135 kb on + strand at 159.136 kb on - strand at 159.136 kb on - strand at 159.136 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 156,568 + -0.9 156,574 + +0.7 156,574 + -0.5 156,575 - +0.0 156,741 - +0.1 156,741 - +0.2 156,748 - -0.4 156,751 - +0.1 156,751 - +1.3 156,755 - +1.1 156,755 - +0.4 156,826 - +0.1 156,826 - +0.4 156,858 + +0.1 156,967 + SMa0279 0.27 +0.7 156,967 + SMa0279 0.27 -0.3 156,968 - SMa0279 0.27 -0.3 156,983 + SMa0279 0.30 -1.8 157,261 - SMa0279 0.75 -1.8 157,377 - -0.6 157,401 + -0.7 157,401 + -0.6 157,402 - -1.3 157,449 + +0.2 157,450 - +0.4 157,491 - +0.7 157,558 + -0.2 157,558 + +1.7 157,559 - +1.7 157,563 - +1.7 157,563 - +0.2 157,576 - -0.2 157,627 - +0.4 157,711 + SMa0280 0.20 -0.3 157,712 - SMa0280 0.20 -0.2 157,712 - SMa0280 0.20 +1.1 157,825 + SMa0280 0.34 -0.0 157,826 - SMa0280 0.34 -0.5 157,831 + SMa0280 0.35 +0.0 157,837 + SMa0280 0.35 -0.3 157,844 - SMa0280 0.36 -0.9 157,844 - SMa0280 0.36 +1.7 157,872 + +1.5 157,873 + SMa0280 0.40 -0.3 157,873 + SMa0280 0.40 -2.1 157,873 + SMa0280 0.40 -0.3 157,874 - SMa0280 0.40 -0.2 157,874 - SMa0280 0.40 -0.0 157,974 - SMa0280 0.53 +0.5 158,054 - SMa0280 0.63 -0.1 158,286 + -0.5 158,563 + SMa0281 0.40 -0.1 158,573 - SMa0281 0.43 -0.4 158,712 - SMa0281 0.77 +0.1 158,735 + SMa0281 0.83 +0.6 158,735 + SMa0281 0.83 +0.1 158,846 - -0.4 158,926 + -0.5 158,927 - -0.5 158,927 - -0.4 158,927 - +1.1 158,975 - -0.1 158,975 - +1.7 159,012 - +0.7 159,072 - -0.0 159,135 + -0.3 159,135 + -0.4 159,136 - -1.7 159,136 - -0.1 159,136 - -0.5
Or see this region's nucleotide sequence