Strain Fitness in Sinorhizobium meliloti 1021 around SMc03237

Experiment: LB no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03235 and SMc03236 are separated by 2 nucleotidesSMc03236 and SMc03237 are separated by 177 nucleotidesSMc03237 and SMc03238 are separated by 235 nucleotidesSMc03238 and SMc03239 are separated by 144 nucleotides SMc03235: SMc03235 - hypothetical protein, at 3,344,395 to 3,344,874 SMc03235 SMc03236: SMc03236 - glutamine amidotransferase, at 3,344,877 to 3,345,635 SMc03236 SMc03237: SMc03237 - transport transmembrane protein, at 3,345,813 to 3,347,060 SMc03237 SMc03238: SMc03238 - hypothetical protein, at 3,347,296 to 3,347,589 SMc03238 SMc03239: SMc03239 - inorganic pyrophosphatase, at 3,347,734 to 3,348,267 SMc03239 Position (kb) 3345 3346 3347 3348Strain fitness (log2 ratio) -1 0 1at 3345.309 kb on + strand, within SMc03236at 3345.309 kb on + strand, within SMc03236at 3345.375 kb on + strand, within SMc03236at 3346.002 kb on + strand, within SMc03237at 3346.002 kb on + strand, within SMc03237at 3346.020 kb on + strand, within SMc03237at 3346.062 kb on + strand, within SMc03237at 3346.063 kb on - strand, within SMc03237at 3346.063 kb on - strand, within SMc03237at 3346.076 kb on - strand, within SMc03237at 3346.195 kb on + strand, within SMc03237at 3346.195 kb on + strand, within SMc03237at 3346.195 kb on + strand, within SMc03237at 3346.411 kb on + strand, within SMc03237at 3346.412 kb on - strand, within SMc03237at 3346.698 kb on + strand, within SMc03237at 3346.698 kb on + strand, within SMc03237at 3346.743 kb on + strand, within SMc03237at 3346.828 kb on + strand, within SMc03237at 3346.930 kb on + strand, within SMc03237at 3346.931 kb on - strand, within SMc03237at 3346.975 kb on + strandat 3347.209 kb on - strandat 3347.263 kb on + strandat 3347.587 kb on + strandat 3347.588 kb on - strandat 3347.643 kb on + strandat 3347.644 kb on - strandat 3347.644 kb on - strandat 3347.659 kb on + strandat 3347.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress control
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3,345,309 + SMc03236 0.57 +0.3
3,345,309 + SMc03236 0.57 +0.3
3,345,375 + SMc03236 0.66 +0.0
3,346,002 + SMc03237 0.15 +0.3
3,346,002 + SMc03237 0.15 +0.1
3,346,020 + SMc03237 0.17 +0.1
3,346,062 + SMc03237 0.20 +0.8
3,346,063 - SMc03237 0.20 -0.1
3,346,063 - SMc03237 0.20 +0.3
3,346,076 - SMc03237 0.21 +0.3
3,346,195 + SMc03237 0.31 +0.5
3,346,195 + SMc03237 0.31 +0.7
3,346,195 + SMc03237 0.31 -0.3
3,346,411 + SMc03237 0.48 +0.7
3,346,412 - SMc03237 0.48 -1.0
3,346,698 + SMc03237 0.71 -0.1
3,346,698 + SMc03237 0.71 +1.3
3,346,743 + SMc03237 0.75 +0.2
3,346,828 + SMc03237 0.81 +0.8
3,346,930 + SMc03237 0.90 -0.1
3,346,931 - SMc03237 0.90 +0.3
3,346,975 + +0.3
3,347,209 - -0.7
3,347,263 + -0.5
3,347,587 + -0.3
3,347,588 - -0.2
3,347,643 + -0.6
3,347,644 - -0.3
3,347,644 - +0.0
3,347,659 + -0.4
3,347,736 - -0.5

Or see this region's nucleotide sequence