Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03235 and SMc03236 are separated by 2 nucleotides SMc03236 and SMc03237 are separated by 177 nucleotides SMc03237 and SMc03238 are separated by 235 nucleotides SMc03238 and SMc03239 are separated by 144 nucleotides
SMc03235: SMc03235 - hypothetical protein, at 3,344,395 to 3,344,874
SMc03235
SMc03236: SMc03236 - glutamine amidotransferase, at 3,344,877 to 3,345,635
SMc03236
SMc03237: SMc03237 - transport transmembrane protein, at 3,345,813 to 3,347,060
SMc03237
SMc03238: SMc03238 - hypothetical protein, at 3,347,296 to 3,347,589
SMc03238
SMc03239: SMc03239 - inorganic pyrophosphatase, at 3,347,734 to 3,348,267
SMc03239
Position (kb)
3345
3346
3347
3348 Strain fitness (log2 ratio)
-1
0
1 at 3345.309 kb on + strand, within SMc03236 at 3345.309 kb on + strand, within SMc03236 at 3345.375 kb on + strand, within SMc03236 at 3346.002 kb on + strand, within SMc03237 at 3346.002 kb on + strand, within SMc03237 at 3346.020 kb on + strand, within SMc03237 at 3346.062 kb on + strand, within SMc03237 at 3346.063 kb on - strand, within SMc03237 at 3346.063 kb on - strand, within SMc03237 at 3346.076 kb on - strand, within SMc03237 at 3346.195 kb on + strand, within SMc03237 at 3346.195 kb on + strand, within SMc03237 at 3346.195 kb on + strand, within SMc03237 at 3346.411 kb on + strand, within SMc03237 at 3346.412 kb on - strand, within SMc03237 at 3346.698 kb on + strand, within SMc03237 at 3346.698 kb on + strand, within SMc03237 at 3346.743 kb on + strand, within SMc03237 at 3346.828 kb on + strand, within SMc03237 at 3346.930 kb on + strand, within SMc03237 at 3346.931 kb on - strand, within SMc03237 at 3346.975 kb on + strand at 3347.209 kb on - strand at 3347.263 kb on + strand at 3347.587 kb on + strand at 3347.588 kb on - strand at 3347.643 kb on + strand at 3347.644 kb on - strand at 3347.644 kb on - strand at 3347.659 kb on + strand at 3347.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 3,345,309 + SMc03236 0.57 +0.3 3,345,309 + SMc03236 0.57 +0.3 3,345,375 + SMc03236 0.66 +0.0 3,346,002 + SMc03237 0.15 +0.3 3,346,002 + SMc03237 0.15 +0.1 3,346,020 + SMc03237 0.17 +0.1 3,346,062 + SMc03237 0.20 +0.8 3,346,063 - SMc03237 0.20 -0.1 3,346,063 - SMc03237 0.20 +0.3 3,346,076 - SMc03237 0.21 +0.3 3,346,195 + SMc03237 0.31 +0.5 3,346,195 + SMc03237 0.31 +0.7 3,346,195 + SMc03237 0.31 -0.3 3,346,411 + SMc03237 0.48 +0.7 3,346,412 - SMc03237 0.48 -1.0 3,346,698 + SMc03237 0.71 -0.1 3,346,698 + SMc03237 0.71 +1.3 3,346,743 + SMc03237 0.75 +0.2 3,346,828 + SMc03237 0.81 +0.8 3,346,930 + SMc03237 0.90 -0.1 3,346,931 - SMc03237 0.90 +0.3 3,346,975 + +0.3 3,347,209 - -0.7 3,347,263 + -0.5 3,347,587 + -0.3 3,347,588 - -0.2 3,347,643 + -0.6 3,347,644 - -0.3 3,347,644 - +0.0 3,347,659 + -0.4 3,347,736 - -0.5
Or see this region's nucleotide sequence