Experiment: LB no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0199 and SMa0203 are separated by 58 nucleotides SMa0203 and SMa0204 are separated by 273 nucleotides
SMa0199: SMa0199 - ABC transporter ATP-binding protein, at 109,766 to 111,229
SMa0199
SMa0203: SMa0203 - ABC transporter substrate-binding protein, at 111,288 to 112,304
SMa0203
SMa0204: SMa0204 - sensor histidine kinase, at 112,578 to 113,825
SMa0204
Position (kb) 111
112
113 Strain fitness (log2 ratio) -1
0
1 at 110.396 kb on - strand, within SMa0199 at 110.475 kb on - strand, within SMa0199 at 110.564 kb on - strand, within SMa0199 at 110.596 kb on + strand, within SMa0199 at 110.596 kb on + strand, within SMa0199 at 110.597 kb on - strand, within SMa0199 at 110.894 kb on + strand, within SMa0199 at 110.992 kb on - strand, within SMa0199 at 111.088 kb on + strand at 111.088 kb on + strand at 111.088 kb on + strand at 111.088 kb on + strand at 111.089 kb on - strand at 111.204 kb on - strand at 111.214 kb on + strand at 111.215 kb on - strand at 111.259 kb on + strand at 111.363 kb on - strand at 111.396 kb on + strand, within SMa0203 at 111.397 kb on - strand, within SMa0203 at 111.430 kb on - strand, within SMa0203 at 111.430 kb on - strand, within SMa0203 at 111.625 kb on + strand, within SMa0203 at 111.831 kb on + strand, within SMa0203 at 111.831 kb on + strand, within SMa0203 at 111.865 kb on + strand, within SMa0203 at 112.034 kb on - strand, within SMa0203 at 112.034 kb on - strand, within SMa0203 at 112.195 kb on + strand, within SMa0203 at 112.195 kb on + strand, within SMa0203 at 112.195 kb on + strand, within SMa0203 at 112.196 kb on - strand, within SMa0203 at 112.196 kb on - strand, within SMa0203 at 112.196 kb on - strand, within SMa0203 at 112.196 kb on - strand, within SMa0203 at 112.196 kb on - strand, within SMa0203 at 112.196 kb on - strand, within SMa0203 at 112.293 kb on - strand at 112.405 kb on - strand at 112.405 kb on - strand at 112.437 kb on - strand at 112.491 kb on - strand at 112.491 kb on - strand at 112.522 kb on - strand at 112.522 kb on - strand at 112.747 kb on - strand, within SMa0204 at 112.747 kb on - strand, within SMa0204 at 112.747 kb on - strand, within SMa0204 at 112.747 kb on - strand, within SMa0204 at 112.747 kb on - strand, within SMa0204 at 112.952 kb on - strand, within SMa0204 at 113.016 kb on + strand, within SMa0204 at 113.018 kb on + strand, within SMa0204 at 113.063 kb on + strand, within SMa0204 at 113.063 kb on + strand, within SMa0204 at 113.063 kb on + strand, within SMa0204 at 113.063 kb on + strand, within SMa0204
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress control remove 110,396 - SMa0199 0.43 +0.1 110,475 - SMa0199 0.48 +0.2 110,564 - SMa0199 0.55 +0.1 110,596 + SMa0199 0.57 -0.1 110,596 + SMa0199 0.57 +0.4 110,597 - SMa0199 0.57 -0.8 110,894 + SMa0199 0.77 +0.1 110,992 - SMa0199 0.84 +0.4 111,088 + -0.1 111,088 + +0.6 111,088 + +0.0 111,088 + +0.1 111,089 - +0.6 111,204 - -0.6 111,214 + -0.2 111,215 - +0.1 111,259 + -0.5 111,363 - -0.2 111,396 + SMa0203 0.11 -0.2 111,397 - SMa0203 0.11 -0.6 111,430 - SMa0203 0.14 -0.1 111,430 - SMa0203 0.14 -1.2 111,625 + SMa0203 0.33 -1.2 111,831 + SMa0203 0.53 -0.2 111,831 + SMa0203 0.53 -0.3 111,865 + SMa0203 0.57 -0.6 112,034 - SMa0203 0.73 +0.3 112,034 - SMa0203 0.73 +0.0 112,195 + SMa0203 0.89 -1.4 112,195 + SMa0203 0.89 -0.3 112,195 + SMa0203 0.89 -0.1 112,196 - SMa0203 0.89 -0.2 112,196 - SMa0203 0.89 -1.0 112,196 - SMa0203 0.89 -0.6 112,196 - SMa0203 0.89 -0.0 112,196 - SMa0203 0.89 -0.6 112,196 - SMa0203 0.89 +0.8 112,293 - +1.2 112,405 - -0.1 112,405 - -0.6 112,437 - +1.2 112,491 - -0.0 112,491 - -0.1 112,522 - -0.2 112,522 - +0.5 112,747 - SMa0204 0.14 -0.2 112,747 - SMa0204 0.14 -0.1 112,747 - SMa0204 0.14 -1.1 112,747 - SMa0204 0.14 -0.1 112,747 - SMa0204 0.14 -0.0 112,952 - SMa0204 0.30 -0.6 113,016 + SMa0204 0.35 -1.0 113,018 + SMa0204 0.35 -0.4 113,063 + SMa0204 0.39 -0.7 113,063 + SMa0204 0.39 +0.2 113,063 + SMa0204 0.39 +0.8 113,063 + SMa0204 0.39 -0.6
Or see this region's nucleotide sequence